PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604033.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 293aa    MW: 30589.7 Da    PI: 9.6641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-063659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_009604033.1 36 KSKPCTKFFSTAGCPFGENCHFLH 59
                    7789******************** PP
2zf-CCCH29.81e-0997122227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ +     Ck+Gd+C+FaHg+
  XP_009604033.1  97 KTKLCNKYNTAEGCKFGDKCNFAHGE 122
                     8***********************96 PP
3zf-CCCH37.83.1e-12260284126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC++fa+ G C +GdrC+FaHg
  XP_009604033.1 260 FKTKLCDNFAK-GSCTFGDRCHFAHG 284
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843462IPR000571Zinc finger, CCCH-type
SMARTSM003560.773461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-63561IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-43659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-83659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-894125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-1394125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92995123IPR000571Zinc finger, CCCH-type
SMARTSM003560.001495122IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-797122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.57E-15161237IPR004088K Homology domain, type 1
SMARTSM003229.6E-12165235IPR004087K Homology domain
PROSITE profilePS5008414.236166230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.0E-16167235IPR004088K Homology domain, type 1
CDDcd001051.02E-13168231No hitNo description
PfamPF000133.8E-11168232IPR004088K Homology domain, type 1
PfamPF083520.65233283IPR013563Oligopeptide/dipeptide ABC transporter, C-terminal
Gene3DG3DSA:4.10.1000.102.5E-16255290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-8259289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.408259286IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-8259285IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-10260284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015833Biological Processpeptide transport
GO:0003723Molecular FunctionRNA binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDNRKRNRND AGANVNGGVK KYKPEMDSLS SGIGSKSKPC TKFFSTAGCP FGENCHFLHY  60
VPGGYNAVAQ MMKLAPAPSL RNSAAPPMSN GNASAVKTKL CNKYNTAEGC KFGDKCNFAH  120
GEWEVGKPIM PSQEDPRAMG VGPVPGRFGG WIEPAVSGPA ASFGTSATAK ISVDASLAGA  180
IIGKGGVHSK QICRQTGAKL AIRDHETDKN LRNIELEGTF EQISQASAMV KELINSLGSV  240
GGPGRTPAIP GGAAPPGSNF KTKLCDNFAK GSCTFGDRCH FAHGAAELRK TGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604033.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3XYD30.0A0A1S3XYD3_TOBAC; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009604033.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-93C3H family protein