PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603941.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 282aa    MW: 30399.9 Da    PI: 4.4704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055257278323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     C+ C+++F +   L++H +  H
  XP_009603941.1 257 CKTCSRTFGSETALESHSKAkH 278
                     *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.596255282IPR007087Zinc finger, C2H2
PROSITE patternPS000280257278IPR007087Zinc finger, C2H2
PfamPF139121.4E-5257279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEFWGAEVKS GQPLTVQPGD DMVLHLSQAS LGEAKKDKGS EPVCLSVNVD GKKLALGTLN  60
LDKLPQQQFD LVFDRDFELS HNWKNGSVYF FGYKAANPYE QEEDEDESDE EIPLTLANTG  120
KSEAKASAND SASGKQKVKI AEPSKDAKAD DEDDSSDEDD TSEDEEDSEM GEDEDDSDED  180
QSDEETPKKA EPSKKRPSDS AIKTPAPDKK AKFATPQKTD GKKGAVHVAT PHPSKQAGKT  240
SGNKSNQTPK SGGSLACKTC SRTFGSETAL ESHSKAKHSV GK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9031760.0FJ903176.1 Nicotiana tabacum cultivar Xanthi type 2 histone deacetylase c (HD2c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312279.10.0histone deacetylase HDT1-like
RefseqXP_009603941.10.0PREDICTED: histone deacetylase HDT1-like isoform X1
RefseqXP_016459437.10.0PREDICTED: histone deacetylase HDT1-like isoform X1
SwissprotQ6V9I61e-110HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLE1U7Y40.0E1U7Y4_TOBAC; Type 2 histone deacetylase c
STRINGXP_009603941.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-35histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]