PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009603775.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 216aa MW: 24283.1 Da PI: 4.1415

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009603775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.8	4.7e-14	53	139	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv ++++++k++ +p +f+ e+g + ++le ++g W+vkl +++sg+ +l++GW++F + + g f++F+++g+s f v XP_009603775.1 53 FFKVILSPHASKLH---IPDEFVMEYGVD--LRDVVSLEVPDGAMWKVKL--QNCSGMAWLKEGWNRFKEYYSIGCGYFLLFRYNGNSHF--SVF 138 88888888888876...*******866..4558***********..*******************************99999..555 PP E CS B3 96 v 96 + XP_009603775.1 139 I 139 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-21	47	143	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.279	50	143	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.34E-22	50	150	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.13E-17	51	141	No hit	No description
SMART	SM01019	1.7E-12	53	143	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-11	53	139	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSPDEGIDFS HCSLNKQNFD ITSSHKEQTA ETAERRLPEE PKPVDSPETP PQFFKVILSP 60 HASKLHIPDE FVMEYGVDLR DVVSLEVPDG AMWKVKLQNC SGMAWLKEGW NRFKEYYSIG 120 CGYFLLFRYN GNSHFSVFIF DLSASEIDYP PGPNEDEISP GLNEDLTPEI SPGPNENLAP 180 ENLCVVAEPE ENPLTCQENS CAETLLMISQ PSRPNV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016483682.1	1e-160	PREDICTED: B3 domain-containing protein At1g49475-like
TrEMBL	A0A1S4B430	1e-159	A0A1S4B430_TOBAC; B3 domain-containing protein At1g49475-like
STRING	XP_009603775.1	1e-159	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13290	12	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	8e-27	B3 family protein