PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009603629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 435aa MW: 50243.3 Da PI: 6.1439 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 196 | 242 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+++G + W+ Ia+ + gR +kqc++rw+++l XP_009603629.1 196 KGQWTIEEDRLLIHLVEKFGVRKWSQIAQLLK-GRIGKQCRERWHNHL 242 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.9e-18 | 250 | 290 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+ XP_009603629.1 250 LWTEEEDRILIEAHAEVGNK-WAEIAKRLP-GRTENSIKNHWN 290 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.628 | 191 | 246 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-15 | 195 | 244 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.14E-31 | 196 | 289 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-16 | 196 | 242 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 197 | 249 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.28E-13 | 199 | 242 | No hit | No description |
SMART | SM00717 | 6.8E-18 | 247 | 295 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.892 | 247 | 297 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.4E-17 | 250 | 290 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 250 | 296 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-13 | 251 | 293 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MELDPSNKQD LSFHPIFVPN NNSLKPELDD DFCIDSKDYF QDFQHLDLNF SLSGGVLPNY 60 TFNNTENFMI DTNGYDPFDP FSNEDNFSSL GDFNFSYELK PFDEENGNTI KENPMDVNYT 120 YNGSCFNSLS CEDVKPLNFV VPDQSSSCVT NGSNCKLEIG ELRKNKKVKR NDQSYLLSSS 180 MKKLGRGRNK KSKSAKGQWT IEEDRLLIHL VEKFGVRKWS QIAQLLKGRI GKQCRERWHN 240 HLRPDIKKDL WTEEEDRILI EAHAEVGNKW AEIAKRLPGR TENSIKNHWN ATKRRQFSRR 300 KCRTKWPRPS SLLQNYIKSL NLEKGSSKKN SQTCNATNSS AKVKVSTKPE ATDQFCQGNM 360 EQVRDFDFSE VPEFALDDKF FEENTMNSFM EDMHVGPNST MEKCMGLEII PYELRQGEVS 420 NKEIDLMEMI SGVNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-45 | 196 | 296 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-45 | 196 | 296 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC219210 | 2e-79 | AC219210.1 Solanum lycopersicum chromosome 6 clone C06HBa0082B05, complete sequence. | |||
GenBank | AC232944 | 2e-79 | AC232944.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 6 clone LE_HBa-24A16, complete sequence. | |||
GenBank | HG975518 | 2e-79 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603629.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | A0A1J6IMW2 | 0.0 | A0A1J6IMW2_NICAT; Transcription factor myb98 | ||||
STRING | XP_009603629.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 5e-80 | myb domain protein 98 |