PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009603183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 482aa MW: 53571.1 Da PI: 6.4573 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 197 | 256 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aaka++ a++k++g XP_009603183.1 197 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAAKAYDLAALKYWG 256 57*******************666664478446**********99*************98 PP | |||||||
2 | AP2 | 49.9 | 7.9e-16 | 299 | 350 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_009603183.1 299 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 350 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.22E-22 | 197 | 266 | No hit | No description |
Pfam | PF00847 | 2.4E-11 | 197 | 256 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-17 | 197 | 266 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-15 | 198 | 265 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.913 | 198 | 264 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-28 | 198 | 270 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 199 | 210 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-10 | 299 | 350 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.21E-12 | 299 | 358 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 299 | 359 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-18 | 300 | 358 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.151 | 300 | 358 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 300 | 364 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 340 | 360 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MAPENNNWLS FSLSSMEMLN SSSPQSSNML QSADSNHYYF ADNNFFPHGW TNQKSQVMYS 60 EGEKQTINDD SLIFYSQIHQ QQQPPKLEDF LGGETTETQD SSLTHMYDHG GSAAGAGYFN 120 GGFQTFSANS ASEVDDSHVM GTEFATESSN ELGYSQYPTG ALSLAVNTTT TTSEKAIVAV 180 DSENCKKITD NFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE 240 DKAAKAYDLA ALKYWGPTAT TNFPVSNYTK ELEDMKHMTK QEFIASLRRK SSGFSRGASI 300 YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN 360 RYDVEAIMKS ALPIGGAAKR LKISLESEQK PSLNNNYQQQ TQCSSVNSSS INFGPIPPVS 420 AIPCGVPYDA NQPFYHHSFF PHLPYSNNGG ASDTSGAMTN MIAAMPLLQS PAEIFIWPHQ 480 SY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603183.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 1e-162 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A1S4BYD7 | 0.0 | A0A1S4BYD7_TOBAC; AP2-like ethylene-responsive transcription factor AIL6 | ||||
STRING | XP_009603183.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2580 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.1 | 1e-146 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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