PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009602824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25878.3 Da PI: 8.4271 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.3 | 1.7e-17 | 21 | 62 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 kri+n r+ tfskRr g++KKA+EL++L +ae+a+++ s XP_009602824.1 21 KRIDNLNSRHATFSKRRLGLFKKASELCILSGAEIAILVQSL 62 79*************************************984 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.198 | 13 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-23 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-21 | 14 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-11 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-17 | 22 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-11 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MNTTTHSTVK KTQGRRKIAI KRIDNLNSRH ATFSKRRLGL FKKASELCIL SGAEIAILVQ 60 SLKRQRLFAF GHPNVDAVIN RYLIGKSSSS STADQYNVQQ NNQYYSQICR ELEADKKKKE 120 IIENSKIVNN NEGFWWNEPI DDMGIEELEE FMAALEELKK KVTMRADELS MITGSSVLPT 180 TSTINNNIAR FGAEDQFLNQ AAIDYCSSIV PYQLNYPGDG QFLSGYYD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602824.1 | 1e-171 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1J6L6Y0 | 1e-129 | A0A1J6L6Y0_NICAT; Agamous-like mads-box protein agl62 | ||||
STRING | XP_009602824.1 | 1e-171 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-24 | AGAMOUS-like 62 |