PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602400.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 111aa    MW: 12645.1 Da    PI: 10.083
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.41.3e-1448101356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ t+ +  +++L e F++n+yp++++ e+L k+lgLt  qV+ WF N R  ++
  XP_009602400.1  48 KKKTYREGAIKRLYESFKENQYPDRDANEKLGKELGLTAHQVSKWFENARHCHR 101
                     567888999****************************************97655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.24843103IPR001356Homeobox domain
SMARTSM003896.7E-1046107IPR001356Homeobox domain
SuperFamilySSF466893.76E-1346108IPR009057Homeodomain-like
PfamPF000464.2E-1248101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-144897IPR009057Homeodomain-like
CDDcd000862.29E-1048104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MTSPSSTLAD TKYQSGKQKG SRHASDRGLC EKLKIGGMDT SELHSSGKKK TYREGAIKRL  60
YESFKENQYP DRDANEKLGK ELGLTAHQVS KWFENARHCH RHSSRWDSIM S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602400.12e-78PREDICTED: pathogenesis-related homeodomain protein-like isoform X2
RefseqXP_018626803.12e-78PREDICTED: pathogenesis-related homeodomain protein-like isoform X2
TrEMBLA0A1S3Z4V12e-76A0A1S3Z4V1_TOBAC; pathogenesis-related homeodomain protein-like isoform X1
STRINGXP_009602398.14e-77(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-10Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain