PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602399.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 165aa    MW: 18772.2 Da    PI: 8.285
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.23.3e-14102154355
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k+ t+ +  +++L e F++n+yp++++ e+L k+lgLt  qV+ WF N R  +
  XP_009602399.1 102 KKKTYREGAIKRLYESFKENQYPDRDANEKLGKELGLTAHQVSKWFENARHCH 154
                     567888999****************************************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.24897157IPR001356Homeobox domain
SMARTSM003896.7E-10100161IPR001356Homeobox domain
SuperFamilySSF466891.03E-12100161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-13102151IPR009057Homeodomain-like
PfamPF000461.0E-11102155IPR001356Homeobox domain
CDDcd000864.69E-11102158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MIYFIEMVCL CMSYFIDHIC TCILQCGSLS SDEDFEGGPS SKEREREIRS AKATMTSPSS  60
TLADTKYQSG KQKGSRHASD RGLCEKLKIG GMDTSELHSS GKKKTYREGA IKRLYESFKE  120
NQYPDRDANE KLGKELGLTA HQVSKWFENA RHCHRHSSRW DSIMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602399.11e-121PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
TrEMBLA0A1S3Z4V14e-90A0A1S3Z4V1_TOBAC; pathogenesis-related homeodomain protein-like isoform X1
STRINGXP_009602398.11e-120(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-09Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain