PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602393.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 627aa    MW: 69783 Da    PI: 5.0158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09511559348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT +E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_009602393.1 511 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNLL 559
                      8****************************999*9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.269504563IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-14505562IPR009057Homeodomain-like
SuperFamilySSF466892.39E-16506564IPR009057Homeodomain-like
SMARTSM007172.0E-8508561IPR001005SANT/Myb domain
CDDcd116608.79E-19510560No hitNo description
PfamPF002493.9E-7511559IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MEANEADIEG SVFPVTNTLG ALEKEIADPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED  60
DKCEPKLVPD TRQTTESCKT EGCLMERNPF QAPEESFSGK LEYENPKVVA EKSNASVDKV  120
PDLEKMGAPE KVTVHGSAPC SELSNIDLSG RTEISFNSED ALNEDTPSTS ASSSWKPDFS  180
KLEGKICLDN LTVKELQETF KATFGRETSV KDKQWLKRRI TMGLTNSCDF SCTTFIIRDN  240
LVVRKGEEQI SHPVKVRISA DPEVGVANSD SGGSLGDRDN RVNDDANFSG TDVPSSAFES  300
CNVTKDLYAE QGTAKRVRKP TKRYIEELSE IEETSEKLPS SYKVSRYRFP CTESLMRPTT  360
NVRSNARPLF TRQDSLGGSG VQIPFVSRIR RSRPRENFTS LLKLQPSDMD MATRQVRSVF  420
DASGPQEDDK RNNDLIKTSS TPGWTKQPLI AACEKDEHYS GMRIVELEND MNEDNSDDNV  480
ELNDGFEDNS DDNVISVPTP KGGMRRKHHR PWTIDEVVKL VEGVARYGAG RWSEIKRLAF  540
ASCPYRTSVD LKDKWRNLLK ASFVQLPAEK GMLNSRKQAS VPIPAPILSR VRELADMQGQ  600
FQPILSTGKS SGHSSGRSVH EARSGYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459219.10.0PREDICTED: uncharacterized protein LOC107782799 isoform X1
RefseqXP_016459220.10.0PREDICTED: uncharacterized protein LOC107782799 isoform X1
TrEMBLA0A1S3Z4410.0A0A1S3Z441_TOBAC; uncharacterized protein LOC107782799 isoform X1
STRINGXP_009602392.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-96TRF-like 6