PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009602392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 627aa MW: 69783 Da PI: 5.0158 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 511 | 559 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT +E +lv++v+++G g+W+ I r Rt ++k++w+++l XP_009602392.1 511 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNLL 559 8****************************999*9*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.269 | 504 | 563 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-14 | 505 | 562 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.39E-16 | 506 | 564 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-8 | 508 | 561 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 8.79E-19 | 510 | 560 | No hit | No description |
Pfam | PF00249 | 3.9E-7 | 511 | 559 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MEANEADIEG SVFPVTNTLG ALEKEIADPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED 60 DKCEPKLVPD TRQTTESCKT EGCLMERNPF QAPEESFSGK LEYENPKVVA EKSNASVDKV 120 PDLEKMGAPE KVTVHGSAPC SELSNIDLSG RTEISFNSED ALNEDTPSTS ASSSWKPDFS 180 KLEGKICLDN LTVKELQETF KATFGRETSV KDKQWLKRRI TMGLTNSCDF SCTTFIIRDN 240 LVVRKGEEQI SHPVKVRISA DPEVGVANSD SGGSLGDRDN RVNDDANFSG TDVPSSAFES 300 CNVTKDLYAE QGTAKRVRKP TKRYIEELSE IEETSEKLPS SYKVSRYRFP CTESLMRPTT 360 NVRSNARPLF TRQDSLGGSG VQIPFVSRIR RSRPRENFTS LLKLQPSDMD MATRQVRSVF 420 DASGPQEDDK RNNDLIKTSS TPGWTKQPLI AACEKDEHYS GMRIVELEND MNEDNSDDNV 480 ELNDGFEDNS DDNVISVPTP KGGMRRKHHR PWTIDEVVKL VEGVARYGAG RWSEIKRLAF 540 ASCPYRTSVD LKDKWRNLLK ASFVQLPAEK GMLNSRKQAS VPIPAPILSR VRELADMQGQ 600 FQPILSTGKS SGHSSGRSVH EARSGYL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016459219.1 | 0.0 | PREDICTED: uncharacterized protein LOC107782799 isoform X1 | ||||
Refseq | XP_016459220.1 | 0.0 | PREDICTED: uncharacterized protein LOC107782799 isoform X1 | ||||
TrEMBL | A0A1S3Z441 | 0.0 | A0A1S3Z441_TOBAC; uncharacterized protein LOC107782799 isoform X1 | ||||
STRING | XP_009602392.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11881 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-96 | TRF-like 6 |