PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602219.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 481aa    MW: 53261.3 Da    PI: 6.706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.12.8e-17301347455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  XP_009602219.1 301 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 347
                     6*************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.476297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-20300374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-18300351No hitNo description
Gene3DG3DSA:4.10.280.104.2E-20301355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-14301347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-18303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNPCLPEWNI EAELSVPHQK KPIGFDHELV ELLWRNGEVV LHSQTHKKQP GYDPNECRQF  60
NKHDQQTIRD VVSCGNHTNL IQDDETISWL NCPIDESFEK EFCSPFLSEI STNPIEVDKS  120
IRQSEDNKAF KFDTLEINNV FPHSHHSGFD PNPMPPPRFH NTGSAKQHNV KEGSVMTVGS  180
SHCGSNQVAI DADTSRFSSS ANIGLSAAMI TDYTGKVSPQ SDTMDRDTFE PANTSSSGGS  240
GSSYARTCNL SAATNSQSHK RKSRDGEEPE CQSKAGELES AGGNKSAQKS GTARRSRAAE  300
VHNLSERRRR DRINEKMKAL QELLPHSTKT DKASMLDEAI EYLKSLQMQL QMMWMGSGMA  360
SMMFPGVQHY MSRMGMGMGP PTVPSIHNAM HLARLPLVDS AIPLNPAAPN QAAMCQNSML  420
NSVNYQRHLQ NPNFQDQYAS YMGFHPLQGA SQQMNIFGLG SQTAQQSQQL SHPTNSNAPN  480
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135820.0BT013582.1 Lycopersicon esculentum clone 132330F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602219.10.0PREDICTED: transcription factor PIF4
RefseqXP_016492244.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_018626747.10.0PREDICTED: transcription factor PIF4
RefseqXP_018626748.10.0PREDICTED: transcription factor PIF4
RefseqXP_018626749.10.0PREDICTED: transcription factor PIF4
TrEMBLA0A1S4BTN60.0A0A1S4BTN6_TOBAC; transcription factor PIF4-like
STRINGXP_009602219.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.22e-51phytochrome interacting factor 4