PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009601943.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 719aa    MW: 80333.1 Da    PI: 6.4856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009601943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.1e-06126146425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C ff++ G+C  GdrC+F H
  XP_009601943.1 126 VPCIFFQQ-GFCLKGDRCPFFH 146
                     79******.***********88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.2823261IPR000571Zinc finger, CCCH-type
SMARTSM003560.00213360IPR000571Zinc finger, CCCH-type
PfamPF156637.8E-113387No hitNo description
PROSITE profilePS5010310.4556389IPR000571Zinc finger, CCCH-type
SMARTSM003560.736588IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573122149IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4123148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5125147IPR000571Zinc finger, CCCH-type
PfamPF146080.09127146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MVGPTPPPQQ LQIQTPSTAP PPAMLSAEDE ALKRNTDCVY FLASPLTCKK GSDCEYRHSD  60
VARLNPRDCW YWLNGSCLNP KCGFRHPPLD GFLGAQVQTP TGSSVPPVAS VAPTPNVPYG  120
SGKQGVPCIF FQQGFCLKGD RCPFFHAPIS VSNKAPPHPL STASTEKTPF KKAFGGLEKC  180
VQGKTFSQAN TWKSGELPVQ TQPVRKLGTH LSKNDAAFNE NVLPPNSVID VVHHRHKPKS  240
VPPTNGNPIG RSNRMQQSVR FDDHSSIQNK DDEISRELSP GFDVLVDDEL RGNAFYQAED  300
QYGRNEGRNE YDIGHSADYT SVADIDQDAY HDVYGLDSHD RLPGRSGSVQ HRASSERIQG  360
ESAHLERRRH GRVYSPEEVR ESDLRHRLSK HKRVNGLRSV ISHDYKSEKH AEDRGYQSSR  420
RDRHHLPSHD SSVASRLRGR IKLPSRPSSP TNGTDMRLDR DMDRARDRGR LSLERPQLFS  480
QQGRLRDRIK GRVQEDLNNA GRNNSGPRLR RDISENDSDF SGPRSLAELK GRKTAETSEQ  540
NVNEQQALGK RKLQKHDGYQ QTGGDLSFEG PMPLQEILKR KRSETGMKSV KSEDYQHERK  600
AHSLVTSSIS RSGSDLGQKE ESDPASGKKN GFQETIAAGH QSPVHHGANE FEAEEGMLVE  660
EEDDQDTEGH DQRDYDYEQV DGEDYNLDEG ENADAGEEYL DDDDDDGDDF AKKMGVVFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601943.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A1S4CQ780.0A0A1S4CQ78_TOBAC; zinc finger CCCH domain-containing protein 17-like
STRINGXP_009601943.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633