PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601615.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 340aa MW: 36970.8 Da PI: 6.8978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H XP_009601615.1 131 YECKTCNRTFSSFQALGGHRASH 153 99**********99999998887 PP
2	zf-C2H2	13.5	0.00022	234	256	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_009601615.1 234 HECSICGSEFSSGQALGGHMRKH 256 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.8E-12	130	155	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.1E-9	130	153	No hit	No description
SMART	SM00355	0.063	131	153	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.074	131	158	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	133	153	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.1E-9	229	256	No hit	No description
SMART	SM00355	0.017	234	256	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.9E-11	234	257	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.91	234	261	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	236	256	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MEVSQDFPDR SYAFKGKRSK RSRPSSPLDI AGTMVTSSSS AAGGSDDGGV GGDVYYSSAI 60 IQYSPTTSTT QISTSSTSEE DEDMANCLIL LAQSGCRKVQ VVSEVKKEKI SSRKFTEMVN 120 TTTGKAGFYV YECKTCNRTF SSFQALGGHR ASHKRPKTIV EEKKSVIITA TATAMATASV 180 GADSPVENHD DYHTENDQEE GRFNKISVPL SIQIANNNKV INSHGNSNSK PKIHECSICG 240 SEFSSGQALG GHMRKHKPPT TTTATNSTKV STNTHIETIY NFSESSHDDV GTNYKEEEKS 300 TRNFLSLDLN LPAPPEDDRR ETKFEQSLVF SAAPLVGCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601615.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1S4CBQ9	0.0	A0A1S4CBQ9_TOBAC; zinc finger protein ZAT5-like
STRING	XP_009601615.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	8e-48	C2H2 family protein