PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009601360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 219aa MW: 25216.7 Da PI: 8.7748 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.3 | 3.3e-07 | 7 | 26 | 2 | 22 |
AP2 2 gykGVrwdkkrgrWvAeIrdp 22 +y+GVr+++ +g+Wv+eIr+p XP_009601360.1 7 RYRGVRQRH-WGSWVSEIRHP 26 69******9.*********97 PP | |||||||
2 | AP2 | 29.3 | 2.2e-09 | 56 | 83 | 28 | 55 |
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55 ++r++lg+f tae+Aa+a+++a++ + g XP_009601360.1 56 KTRIWLGTFETAEDAARAYDEAARFMCG 83 49*********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.76E-29 | 6 | 93 | No hit | No description |
Pfam | PF00847 | 3.5E-8 | 7 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-33 | 7 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-35 | 7 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.771 | 7 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-13 | 45 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.8E-11 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLLL QKYKIKQTSY NRPLWSEPFP DPAHSKTRIW 60 LGTFETAEDA ARAYDEAARF MCGQRARTNF PYNPNMPQTS SSKILSANLT AKLHKCYMAS 120 LQMAKTSAQE HRIQSSHVDV LKNAPIQEHV AYEMKQQMVV PKTSVLTHEE AANLGVKKVQ 180 DVESIPQFVK PLEDDHIEQM IEELLDYGSI ELCSNVTSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 6 | 95 | 4 | 67 | ATERF1 |
3gcc_A | 2e-16 | 6 | 95 | 4 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 7e-74 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601360.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X1 | ||||
Refseq | XP_016512702.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X1 | ||||
Swissprot | Q94AW5 | 3e-67 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A1S4DGU0 | 1e-165 | A0A1S4DGU0_TOBAC; ethylene-responsive transcription factor ERF003-like isoform X1 | ||||
STRING | XP_009601360.1 | 1e-166 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 4e-58 | ERF family protein |
Publications ? help Back to Top | |||
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