PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601191.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 633aa MW: 69138.4 Da PI: 7.1404

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601191.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.3e-30	277	336	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ XP_009601191.1 277 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAqSCPVRKQVQRCAEDMSILITTYEGTHNHP 336 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-32	262	338	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-27	270	338	IPR003657	WRKY domain
PROSITE profile	PS50811	28.805	272	338	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	277	337	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	278	336	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MEAALRNSIH VKEENKNKAE SCPDREDCAE NIFLKVGKGR KEREDDKSKS SSPQQKDFTL 60 DNEGAAVMVK RERSPPELNS MASSSTQKEQ NDQLASAKVE MREVMEENQR LRTHLDRIMK 120 DYRNLQMQFH DIAQKEVEKS SSTVNTTHHE SDEEADQLVS LSLGRTSSDM KKEELSKIFS 180 KDKAHYNEEE EHKAGGLTLG LDCKFEMSAK TTPTTESSPV ILSPENSLEE TKEENGETWP 240 PNKILKTMRN GDDDVSQQNP TKRARVSVRV RCDAPTMNDG CQWRKYGQKI AKGNPCPRAY 300 YRCTVAQSCP VRKQVQRCAE DMSILITTYE GTHNHPLPLA ATAMASTTAA AASMLLSGSS 360 SSSDPSPQVT AAAATTTSSA NLNGLNFYLS DTSKSKPPFY FPNSSFSSSS APNSLPTITL 420 DLTSTSSSSS LSHLTRMGST STFPPARYNN NNNSSANVLN FSSLESNPLP ISWSNGVLNY 480 ANQAYNKNQN IASLAFSSRP TQENLFQSYL QRNINTQSSL PPDAISAATK AITSDPNFHS 540 ALAAALTSII GNTGIGHNNL NHVTEPFPVL SSLPSSSNPN NKCSSTFLNK PTSSSANTQS 600 ANNNLVFFTQ PNSSLPFSAP KGKSTSPSDN KFD

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MEAALRNSIH VKEENKNKAE SCPDREDCAE NIFLKVGKGR KEREDDKSKS SSPQQKDFTL  60
DNEGAAVMVK RERSPPELNS MASSSTQKEQ NDQLASAKVE MREVMEENQR LRTHLDRIMK  120
DYRNLQMQFH DIAQKEVEKS SSTVNTTHHE SDEEADQLVS LSLGRTSSDM KKEELSKIFS  180
KDKAHYNEEE EHKAGGLTLG LDCKFEMSAK TTPTTESSPV ILSPENSLEE TKEENGETWP  240
PNKILKTMRN GDDDVSQQNP TKRARVSVRV RCDAPTMNDG CQWRKYGQKI AKGNPCPRAY  300
YRCTVAQSCP VRKQVQRCAE DMSILITTYE GTHNHPLPLA ATAMASTTAA AASMLLSGSS  360
SSSDPSPQVT AAAATTTSSA NLNGLNFYLS DTSKSKPPFY FPNSSFSSSS APNSLPTITL  420
DLTSTSSSSS LSHLTRMGST STFPPARYNN NNNSSANVLN FSSLESNPLP ISWSNGVLNY  480
ANQAYNKNQN IASLAFSSRP TQENLFQSYL QRNINTQSSL PPDAISAATK AITSDPNFHS  540
ALAAALTSII GNTGIGHNNL NHVTEPFPVL SSLPSSSNPN NKCSSTFLNK PTSSSANTQS  600
ANNNLVFFTQ PNSSLPFSAP KGKSTSPSDN KFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	264	338	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017422	1e-152	GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601191.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	D8VNC6	0.0	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1S4CA48	0.0	A0A1S4CA48_TOBAC; probable WRKY transcription factor 61
STRING	XP_009601191.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	8e-65	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]