PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009601117.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 519aa MW: 56512.6 Da PI: 8.0716 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.8 | 1.3e-11 | 159 | 183 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ XP_009601117.1 159 GEKDCAHYMQTRTCKFGDSCKFDHP 183 7889********************8 PP | |||||||
2 | zf-CCCH | 36.6 | 7.7e-12 | 209 | 234 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t Ck+G+rCkF+H++ XP_009601117.1 209 GEPDCPYFMKTQKCKFGNRCKFNHPK 234 6899********************96 PP | |||||||
3 | zf-CCCH | 38.8 | 1.5e-12 | 257 | 281 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tGtCk+G++CkF+H++ XP_009601117.1 257 EPSCTFYMKTGTCKFGATCKFHHPR 281 577********************96 PP | |||||||
4 | zf-CCCH | 37.2 | 4.8e-12 | 331 | 357 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_009601117.1 331 PGEVDCPFYLKTGSCKYGGTCRYNHPE 357 57899********************96 PP | |||||||
5 | zf-CCCH | 41.7 | 2e-13 | 411 | 434 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+Ck+G+rCkF+H+ XP_009601117.1 411 QIECDFYMKTGECKFGERCKFHHP 434 568********************9 PP | |||||||
6 | zf-CCCH | 37.4 | 4.2e-12 | 468 | 489 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG++CkF H+p XP_009601117.1 468 CPYYMKTGMCKYGATCKFDHPP 489 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.742 | 157 | 185 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 158 | 184 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 159 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 163 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 207 | 235 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.2E-6 | 207 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 209 | 234 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-5 | 212 | 236 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 213 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 254 | 282 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-10 | 257 | 281 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 258 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 260 | 281 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 330 | 358 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-7 | 330 | 357 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 332 | 357 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 334 | 358 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-4 | 336 | 357 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.507 | 408 | 436 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-7 | 408 | 435 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 411 | 437 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-11 | 412 | 434 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 414 | 434 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.319 | 462 | 490 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 462 | 489 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 466 | 489 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 468 | 489 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 468 | 487 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MANQLYGYNP SSNAGIAAGS NLSRSTTRSM GDYLSTDNNK TLLGSSSYFG SSGYSFSSPT 60 MLFNQSDSYN PAASKIPGLA AYQSSWTAPP GVDVAQPPAA DSYFSSLKRS SSDALYHRTL 120 LGARNTIGQA EAWFSANPLA KRPRFESASN LSIYPQRPGE KDCAHYMQTR TCKFGDSCKF 180 DHPIWVPEGG IPDWKEVPVT TESLPERSGE PDCPYFMKTQ KCKFGNRCKF NHPKDNTAHL 240 GSVQNSDVSV LPERPSEPSC TFYMKTGTCK FGATCKFHHP RDIQLPSPKQ ESGSAENPGS 300 ANNEMTEDVN LIKPLSVPAL LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYNHPERTA 360 AIGPALVASP ATHLNIGMVN PAASLLQNLD PRLTQTMLGL LSPVYPQRPG QIECDFYMKT 420 GECKFGERCK FHHPLDRSAP LVSAKDVQQP NVKLTLAGLP RREGAVHCPY YMKTGMCKYG 480 ATCKFDHPPP GEVLGMATSQ GASLSVEGED TVDVKEQQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-113 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601117.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A1U7WXI1 | 0.0 | A0A1U7WXI1_NICSY; zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
STRING | XP_009601117.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10640 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |