PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600900.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 366aa    MW: 40215.8 Da    PI: 10.1334
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30293350359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+v+++tYegeH+h+
  XP_009600900.1 293 DDFSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERALDDPNVLIVTYEGEHDHP 350
                     99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.8E-16241289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.0E-32280350IPR003657WRKY domain
PROSITE profilePS5081130.274286352IPR003657WRKY domain
SuperFamilySSF1182901.57E-26288351IPR003657WRKY domain
SMARTSM007745.4E-37291351IPR003657WRKY domain
PfamPF031064.3E-26293350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAVDLMTTGY RNNNTYTSKI EENAMQEAAA GLQSVEKLIR LLSQSQNLSQ KQKQSFQDPS  60
IKSNSTIDFS PDYLAVADTA VNRFKKFISL LGRTRTGHAR FRRGPITTIS APVLPKVDKE  120
PELLCLPAPS QNRLVEEKLK TENPQAGSKI YCPTPIQRLP PLPLNNHQHQ LVKNGSTSER  180
KESTTTINFA TPSPANSFIS SLTGDTESLQ PSSMTSSGFQ ITNLSQVSSA GRPPLSTSSF  240
KRKCSSMDDL AVKCSSAGGS SGRCHCPKKR KSKVKRVVRI PAISMKMADI PPDDFSWRKY  300
GQKPIKGSPH PRGYYKCSSI RGCPARKHVE RALDDPNVLI VTYEGEHDHP FSITETPPAA  360
IVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21279349271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600900.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-98WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S4ACY90.0A0A1S4ACY9_TOBAC; probable WRKY transcription factor 7
STRINGXP_009600900.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-87WRKY DNA-binding protein 7