PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009600650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 476aa MW: 52881.1 Da PI: 5.4814 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.5 | 9.1e-13 | 150 | 172 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C ++++tGtCkyG +CkF+H+ XP_009600650.1 150 ADCAYYMKTGTCKYGLNCKFNHP 172 68********************8 PP | |||||||
2 | zf-CCCH | 27.1 | 7.3e-09 | 198 | 220 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG+ Ck+ H++ XP_009600650.1 198 ECKYYLTEGGCKYGNACKYYHSR 220 7********************95 PP | |||||||
3 | zf-CCCH | 40.8 | 3.5e-13 | 241 | 265 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++rtG CkyG++C+F+H+ XP_009600650.1 241 GEKDCPYYMRTGSCKYGSNCRFHHP 265 7889********************9 PP | |||||||
4 | zf-CCCH | 37.3 | 4.5e-12 | 416 | 441 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f++r+G+Ck+G+ CkF H++ XP_009600650.1 416 DQAVCSFYSRYGICKFGPACKFDHPE 441 6789********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.6E-5 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 146 | 176 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.192 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-10 | 150 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 152 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 193 | 220 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.882 | 193 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 198 | 220 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 198 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 199 | 220 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-7 | 239 | 266 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.718 | 239 | 267 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-10 | 241 | 265 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-7 | 241 | 267 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-6 | 245 | 264 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 10 | 374 | 395 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.803 | 374 | 391 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 412 | 439 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 414 | 441 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 414 | 442 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 416 | 441 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEAIESQQHI QNLNDSTLEK QGLGLDPQPS FSPDPNVQNP PQNLPDAVES DDDDEIALQF 60 ICEELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGNENENDVE 120 NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSQRRNQWA 180 MEKGKQKDDS EERAGQIECK YYLTEGGCKY GNACKYYHSR RKGAISPVLN INFLGLPIRP 240 GEKDCPYYMR TGSCKYGSNC RFHHPDPSTV AGGDPSSGYN GGSAPVKSAP YPTGSSWSSP 300 RALNGTASFV PVVYPASQGI PLSPQWNGYL APVYPTSGKS LPTPPAFTMK DPAIKTNFYT 360 RAQQPWLVEE YPERPSQPDC SYFIKTGDCK FHHPKNQTSK TNMSVLNDKG LPLRPDQAVC 420 SFYSRYGICK FGPACKFDHP EHYDNSASSI GSVFDQRNSA TSYGSSWRGK ETEVAL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600650.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X3 | ||||
Swissprot | Q9STM4 | 1e-104 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A1S4B1E3 | 0.0 | A0A1S4B1E3_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X3 | ||||
STRING | XP_009600648.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-106 | C3H family protein |
Publications ? help Back to Top | |||
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