PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009600649.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 477aa MW: 53009.2 Da PI: 5.4814

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600649.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.5	9.1e-13	150	172	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C ++++tGtCkyG +CkF+H+ XP_009600649.1 150 ADCAYYMKTGTCKYGLNCKFNHP 172 68********************8 PP
2	zf-CCCH	27.1	7.3e-09	199	221	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG+ Ck+ H++ XP_009600649.1 199 ECKYYLTEGGCKYGNACKYYHSR 221 7********************95 PP
3	zf-CCCH	40.8	3.6e-13	242	266	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++rtG CkyG++C+F+H+ XP_009600649.1 242 GEKDCPYYMRTGSCKYGSNCRFHHP 266 7889********************9 PP
4	zf-CCCH	37.3	4.5e-12	417	442	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f++r+G+Ck+G+ CkF H++ XP_009600649.1 417 DQAVCSFYSRYGICKFGPACKFDHPE 442 6789********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.35E-6	146	176	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	146	173	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.192	146	174	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-10	150	172	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-5	152	172	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.882	194	222	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0035	194	221	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-6	199	221	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	199	222	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-5	200	221	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-7	240	267	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.718	240	268	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-10	242	266	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-7	242	268	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-6	246	265	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	10	375	396	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.803	375	392	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	413	440	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.14	415	443	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-6	415	442	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-9	417	442	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MEAIESQQHI QNLNDSTLEK QGLGLDPQPS FSPDPNVQNP PQNLPDAVES DDDDEIALQF 60 ICEELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGNENENDVE 120 NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSQRRNQQW 180 AMEKGKQKDD SEERAGQIEC KYYLTEGGCK YGNACKYYHS RRKGAISPVL NINFLGLPIR 240 PGEKDCPYYM RTGSCKYGSN CRFHHPDPST VAGGDPSSGY NGGSAPVKSA PYPTGSSWSS 300 PRALNGTASF VPVVYPASQG IPLSPQWNGY LAPVYPTSGK SLPTPPAFTM KDPAIKTNFY 360 TRAQQPWLVE EYPERPSQPD CSYFIKTGDC KFHHPKNQTS KTNMSVLNDK GLPLRPDQAV 420 CSFYSRYGIC KFGPACKFDH PEHYDNSASS IGSVFDQRNS ATSYGSSWRG KETEVAL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MEAIESQQHI QNLNDSTLEK QGLGLDPQPS FSPDPNVQNP PQNLPDAVES DDDDEIALQF  60
ICEELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGNENENDVE  120
NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSQRRNQQW  180
AMEKGKQKDD SEERAGQIEC KYYLTEGGCK YGNACKYYHS RRKGAISPVL NINFLGLPIR  240
PGEKDCPYYM RTGSCKYGSN CRFHHPDPST VAGGDPSSGY NGGSAPVKSA PYPTGSSWSS  300
PRALNGTASF VPVVYPASQG IPLSPQWNGY LAPVYPTSGK SLPTPPAFTM KDPAIKTNFY  360
TRAQQPWLVE EYPERPSQPD CSYFIKTGDC KFHHPKNQTS KTNMSVLNDK GLPLRPDQAV  420
CSFYSRYGIC KFGPACKFDH PEHYDNSASS IGSVFDQRNS ATSYGSSWRG KETEVAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600649.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X2
Swissprot	Q9STM4	1e-104	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A1S4B1N9	0.0	A0A1S4B1N9_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X2
STRING	XP_009600648.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-106	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]