PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600645.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 302aa    MW: 34281.9 Da    PI: 6.9699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.3e-07831226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     ++lC+ffar G C  G+ C F H+
  XP_009600645.1  8 SRVLCKFFAR-GACLKGEHCDFLHD 31
                    589*******.*************6 PP

2zf-CCCH231.4e-073959526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G+C +G+rC++ H+
  XP_009600645.1 39 VCTYYQK-GICAFGSRCRYEHV 59
                    5******.***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.756633IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4732IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7931IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-51134IPR000571Zinc finger, CCCH-type
PfamPF156631.6E-71269No hitNo description
PROSITE profilePS5010313.313461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-53658IPR000571Zinc finger, CCCH-type
SMARTSM003560.00223660IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.53E-12120191No hitNo description
Gene3DG3DSA:3.30.40.101.6E-9120186IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.96E-4126186No hitNo description
PROSITE profilePS5008912.238127185IPR001841Zinc finger, RING-type
SMARTSM001849.1E-7127184IPR001841Zinc finger, RING-type
PfamPF000972.2E-7127184IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180151160IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.821214243IPR000571Zinc finger, CCCH-type
SMARTSM003560.033214242IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MHFLKIFSRV LCKFFARGAC LKGEHCDFLH DSEDVPNNVC TYYQKGICAF GSRCRYEHVK  60
ITRSQPSLPS SSANIVELKR VNATDQSICS SSTAGNCPQG KKEEHMKTCE TRENQHDLLK  120
HSQEIECGVC LERVLSKTIM AERKFGILSE CDHPFCISCI RNWRNSSPSI GMDVNSTLRA  180
CPICRKLSYF VIPSVIWYST KEEKQEIINS YKAKLRSIDC KKFDFGNGTC PFGASCFYKH  240
TVKPGSKLWN STLMPDLHGS SFSDADETES GSDGDMESFR ALFEEAMAFM MWLRDYDTSD  300
DE
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600645.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
RefseqXP_018626269.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotQ6IDS61e-103C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A1S4C3X40.0A0A1S4C3X4_TOBAC; E3 ubiquitin-protein ligase makorin-like isoform X1
STRINGXP_009600645.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-105C3H family protein