PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009600645.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 302aa MW: 34281.9 Da PI: 6.9699 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.2 | 5.3e-07 | 8 | 31 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++lC+ffar G C G+ C F H+ XP_009600645.1 8 SRVLCKFFAR-GACLKGEHCDFLHD 31 589*******.*************6 PP | |||||||
2 | zf-CCCH | 23 | 1.4e-07 | 39 | 59 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G+C +G+rC++ H+ XP_009600645.1 39 VCTYYQK-GICAFGSRCRYEHV 59 5******.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.756 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-4 | 7 | 32 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-7 | 9 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 11 | 34 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.6E-7 | 12 | 69 | No hit | No description |
PROSITE profile | PS50103 | 13.31 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 36 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0022 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 3.53E-12 | 120 | 191 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.6E-9 | 120 | 186 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 6.96E-4 | 126 | 186 | No hit | No description |
PROSITE profile | PS50089 | 12.238 | 127 | 185 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 9.1E-7 | 127 | 184 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.2E-7 | 127 | 184 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 151 | 160 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 12.821 | 214 | 243 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.033 | 214 | 242 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MHFLKIFSRV LCKFFARGAC LKGEHCDFLH DSEDVPNNVC TYYQKGICAF GSRCRYEHVK 60 ITRSQPSLPS SSANIVELKR VNATDQSICS SSTAGNCPQG KKEEHMKTCE TRENQHDLLK 120 HSQEIECGVC LERVLSKTIM AERKFGILSE CDHPFCISCI RNWRNSSPSI GMDVNSTLRA 180 CPICRKLSYF VIPSVIWYST KEEKQEIINS YKAKLRSIDC KKFDFGNGTC PFGASCFYKH 240 TVKPGSKLWN STLMPDLHGS SFSDADETES GSDGDMESFR ALFEEAMAFM MWLRDYDTSD 300 DE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600645.1 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1 | ||||
Refseq | XP_018626269.1 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1 | ||||
Swissprot | Q6IDS6 | 1e-103 | C3H35_ARATH; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A1S4C3X4 | 0.0 | A0A1S4C3X4_TOBAC; E3 ubiquitin-protein ligase makorin-like isoform X1 | ||||
STRING | XP_009600645.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3386 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-105 | C3H family protein |