PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009600534.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 924aa MW: 103382 Da PI: 6.064

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.8e-29	608	659	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ XP_009600534.1 608 AEKNITLQILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 659 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.733	598	679	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-25	611	659	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.45E-22	819	907	No hit	No description
PROSITE profile	PS51745	24.246	826	909	IPR000270	PB1 domain
SMART	SM00666	2.0E-21	826	909	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.5E-21	827	904	No hit	No description
Pfam	PF00564	3.8E-17	828	905	IPR000270	PB1 domain
CDD	cd06407	4.97E-36	828	905	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MSMDERLVVT NTFLTTQFDS FMDLDYMDEL LLEGCFLETI DDREFAHHRP SISNMPFDSS 60 FVWPTLLDTN DVEFSGSPSK DGQQERQRLS FSKNLSVSQF QELNSVKVQS FGENSINAMC 120 SSGQSDCLFD APELSRRWWI GPNDSSSVMD RLIQALGYIK NCSKDKDILI QIWVPIYRDG 180 KRVLSTNDQP FSLDLNCPRL AHYRQASLNY QFPANDDSKE MVGLPGRVFL DKVPEWTPDV 240 QFFQMEEYPR VGHAQQYNVR GTLAVPVFEQ GSRNCLSVIE VVRTTQKIKY SSELESVCKA 300 LEAVDLRSSE VSSTLTAKAC DLTYQAALSE ILEVLKSACK THGLPLAQTW VPCIQHGKGG 360 SRHSNENLIH CVSTEDSACY VADPRVQGFH EACSEHHLLK GQGVVGSAFM TNQPCFTADL 420 TSYSKAEYPL SHYARMFGLH AAVAIRLRSM STGSSDFVLE FFLPPNCRNP EEHKRMLTSL 480 SIIIQNVCQT FRVVSDKELQ DETVSLGEVT SVAASEYSEE VREQERKGSI VSSQERTSWT 540 SSHEEVQETS SVVSAFQDEL LTEEPVALRN QTNSGSATAF AFSRNYRTAG EGISHNWRKA 600 RDRRRLKAEK NITLQILQQY FAGSLKDAAK SIGVCPTTLK RICRQHGIQR WPSRKIKKVG 660 LSLERIQRVI NSVQGVSGTL QIESFYSDFP EFASSNISRS SPFADPTPTN HPEDLNRQPE 720 SGGNNAATSK SVSSSCSQGS SSSQRSIGTQ PHPYPSNVAG HEDPVAEEAS DNHALKRVNS 780 DAELHLSSEA LNPQPRSQSH ASLTESPKSV SLSPMKKSLE RSQEGAPRIK VIHGEEKIRF 840 RIQKNWGYKE LMREIARRFG VDDPSGFHLK YLDDDSDWVL LTCEADLEEC IDVCWSSQNK 900 MIRLLFLCDS QPHLGSSFGS SSSL

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MSMDERLVVT NTFLTTQFDS FMDLDYMDEL LLEGCFLETI DDREFAHHRP SISNMPFDSS  60
FVWPTLLDTN DVEFSGSPSK DGQQERQRLS FSKNLSVSQF QELNSVKVQS FGENSINAMC  120
SSGQSDCLFD APELSRRWWI GPNDSSSVMD RLIQALGYIK NCSKDKDILI QIWVPIYRDG  180
KRVLSTNDQP FSLDLNCPRL AHYRQASLNY QFPANDDSKE MVGLPGRVFL DKVPEWTPDV  240
QFFQMEEYPR VGHAQQYNVR GTLAVPVFEQ GSRNCLSVIE VVRTTQKIKY SSELESVCKA  300
LEAVDLRSSE VSSTLTAKAC DLTYQAALSE ILEVLKSACK THGLPLAQTW VPCIQHGKGG  360
SRHSNENLIH CVSTEDSACY VADPRVQGFH EACSEHHLLK GQGVVGSAFM TNQPCFTADL  420
TSYSKAEYPL SHYARMFGLH AAVAIRLRSM STGSSDFVLE FFLPPNCRNP EEHKRMLTSL  480
SIIIQNVCQT FRVVSDKELQ DETVSLGEVT SVAASEYSEE VREQERKGSI VSSQERTSWT  540
SSHEEVQETS SVVSAFQDEL LTEEPVALRN QTNSGSATAF AFSRNYRTAG EGISHNWRKA  600
RDRRRLKAEK NITLQILQQY FAGSLKDAAK SIGVCPTTLK RICRQHGIQR WPSRKIKKVG  660
LSLERIQRVI NSVQGVSGTL QIESFYSDFP EFASSNISRS SPFADPTPTN HPEDLNRQPE  720
SGGNNAATSK SVSSSCSQGS SSSQRSIGTQ PHPYPSNVAG HEDPVAEEAS DNHALKRVNS  780
DAELHLSSEA LNPQPRSQSH ASLTESPKSV SLSPMKKSLE RSQEGAPRIK VIHGEEKIRF  840
RIQKNWGYKE LMREIARRFG VDDPSGFHLK YLDDDSDWVL LTCEADLEEC IDVCWSSQNK  900
MIRLLFLCDS QPHLGSSFGS SSSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600534.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_009600535.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_016442216.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_016442217.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_016442218.1	0.0	PREDICTED: protein NLP5-like
TrEMBL	A0A1S3XQJ0	0.0	A0A1S3XQJ0_TOBAC; protein NLP5-like
STRING	XP_009600534.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein