PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009600029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 558aa MW: 63227.8 Da PI: 6.591 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 240.9 | 5.2e-74 | 174 | 552 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL cA a++ g+++++q+lL l+elas + d+++Rlaa+ + AL ++l++ +s+ + ++++++ ++ n++ +l f+++sP++++ + XP_009600029.1 174 EHLLNPCAAAITVGNMNRVQHLLYVLHELASFTCDANHRLAAHGLHALTHHLSSPGSSSS-SVAVTNFASANHKFFRDSLINFNDISPWFRIPNN 267 699**************************************************9665555.566666766677777777777************* PP GRAS 97 taNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfef 178 +aN+ +l+ + + + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ + ++ + ++L fA+++++++++ XP_009600029.1 268 VANSSVLQILGERdklKNLHILDIGVSHGVQWPTLLEELTRRSgGPPPLVRLTVITPTIENgefrgtpfvIGPPGYNFSSQLLAFAKAININLQI 362 **********999555667************************55666********9766678999888878888999***************** PP GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhns.esFlerflealeyysalfd 269 n l l++l+ + ++ ++ +E+l+++ +++lh+l+ +s ++er+e+L+++k+l+Pk vv++e++ +++ns ++F++ f++ +ey + ++d XP_009600029.1 363 NRLDNFPLQNLNSQVINSSSdDETLVICAQFRLHNLH---HSNSNERTELLRILKNLEPKGVVLSENNieCSCNScGDFATSFSRRVEYLWRFLD 454 **86669*********98888***************9...67777789*******************93355555269***************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 s+++ + + r + Er++++ e+ +++++ g++ +e++ekW er++++GF + ++e+a + a++llrk++ ++++rvee++g++ l Wk XP_009600029.1 455 STSVAY----KGRESEERRMMEGEAAKALTNTGEM----NERKEKWCERMRSVGFVKEVFGEDAIDGARALLRKYDsNWEMRVEERDGCVDLWWK 541 **9885....77888888888888*********99....88888********************************9999*************** PP GRAS 364 drpLvsvSaWr 374 ++p+ + S W+ XP_009600029.1 542 GQPISFSSLWK 552 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.318 | 147 | 531 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-71 | 174 | 552 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MIKHQNSLSY HPSSWFSDTM TIDEPEPNSN SDPISEWLRT LSDVPTFFDE PYNYPEDLNF 60 YGDSWWIPLN QDTHIVNHDI SDNNICTSFN YSSPVNAATS TMPPEPIILD HPQPLDLSKK 120 RKTSGSDHNP KVSRKNQNRQ MNEVDEIKKS TGQKRVTNKS TTNNGNSKEG RWAEHLLNPC 180 AAAITVGNMN RVQHLLYVLH ELASFTCDAN HRLAAHGLHA LTHHLSSPGS SSSSVAVTNF 240 ASANHKFFRD SLINFNDISP WFRIPNNVAN SSVLQILGER DKLKNLHILD IGVSHGVQWP 300 TLLEELTRRS GGPPPLVRLT VITPTIENGE FRGTPFVIGP PGYNFSSQLL AFAKAININL 360 QINRLDNFPL QNLNSQVINS SSDDETLVIC AQFRLHNLHH SNSNERTELL RILKNLEPKG 420 VVLSENNIEC SCNSCGDFAT SFSRRVEYLW RFLDSTSVAY KGRESEERRM MEGEAAKALT 480 NTGEMNERKE KWCERMRSVG FVKEVFGEDA IDGARALLRK YDSNWEMRVE ERDGCVDLWW 540 KGQPISFSSL WKIDSQCK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-32 | 167 | 552 | 81 | 473 | Protein SHORT-ROOT |
5b3h_B | 1e-32 | 167 | 552 | 27 | 419 | Protein SHORT-ROOT |
5b3h_E | 1e-32 | 167 | 552 | 27 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF032736 | 0.0 | EF032736.1 Nicotiana benthamiana nodulation signaling pathway 1-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600029.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Refseq | XP_016460867.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A1S3Z9H4 | 0.0 | A0A1S3Z9H4_TOBAC; nodulation-signaling pathway 1 protein-like | ||||
STRING | XP_009600029.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-131 | GRAS family protein |
Publications ? help Back to Top | |||
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