PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009599527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 30094.7 Da PI: 8.9877 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eE ll ++vk++G g+W+++a g++R +k+c++rw +yl XP_009599527.1 8 KGPWTAEENRLLFEYVKLHGEGRWSSVATVAGLKRNAKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4e-16 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g T E++l++++++++G++ W+tIa+ ++ gRt++++k++w+++ XP_009599527.1 61 KGQITSHEEKLILELHARWGNR-WATIAKNLP-GRTDNEIKNYWRTH 105 577799****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.863 | 3 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-29 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.65E-11 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 18.942 | 60 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 62 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.37E-10 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MTKEGWRKGP WTAEENRLLF EYVKLHGEGR WSSVATVAGL KRNAKSCRLR WVNYLRPDLK 60 KGQITSHEEK LILELHARWG NRWATIAKNL PGRTDNEIKN YWRTHFKKKT KTSNNKSEIS 120 KARLLKRQQL QEQQQQQCNT DNDTNKVVSY NNNNKNYYAS ILNKLGNRIV SLLNENVNKV 180 PTLPQGNQEM EISYPNTADQ EQDDDFFYSI LNDYTPVPVL ESSSNEDIIW DVLWNLDDFQ 240 CNFSTPTYDT NMAIPFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 8 | 110 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599527.2 | 0.0 | PREDICTED: myb-related protein 340-like isoform X1 | ||||
Refseq | XP_016440640.1 | 0.0 | PREDICTED: myb-related protein 340-like | ||||
Refseq | XP_018625944.1 | 0.0 | PREDICTED: myb-related protein 340-like isoform X1 | ||||
TrEMBL | A0A1S3XKX5 | 0.0 | A0A1S3XKX5_TOBAC; myb-related protein 340-like | ||||
STRING | XP_009599527.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 3e-68 | myb domain protein 305 |