PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009599455.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21248.4 Da    PI: 10.1751
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009599455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.3e-161756342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    ien+  +qvtfskRrng++KKA+EL  +++aev +i+  +
  XP_009599455.1 17 IENQNIQQVTFSKRRNGVFKKANELVAMTGAEVGIIVCPQ 56
                    9***********************************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-16166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.909767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-19977IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-12929IPR002100Transcription factor, MADS-box
PfamPF003191.7E-171763IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSTRRIKVRK SVRLCEIENQ NIQQVTFSKR RNGVFKKANE LVAMTGAEVG IIVCPQGSKP  60
YSFGHPNVNE IINKYVGEKR SPSPSSPGID DKYVQMFRKA NSRELNTRLN SLQDQLDFAL  120
NLKSKLKQMN KKVESQQEWF KGPIEKMNYI EASMLKEGLE DLLLKVKNYG TEHGYGYENG  180
KWKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599455.11e-136PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1S4BZH91e-132A0A1S4BZH9_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009599455.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-25AGAMOUS-like 62