PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009599348.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 448aa    MW: 51244.4 Da    PI: 5.2337
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009599348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.97.5e-251158350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ie  +nrqvtfskRrngilKK +ELSvLCd++va+i+fs++g+l  ys
  XP_009599348.1 11 IERLTNRQVTFSKRRNGILKKIYELSVLCDVDVAIIMFSPSGRLTHYS 58
                    8889*****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.562161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-25291IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-22323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.589111204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGRSKLPLLK IERLTNRQVT FSKRRNGILK KIYELSVLCD VDVAIIMFSP SGRLTHYSRK  60
RRIEDVLSEL VNLPDSERGF YINNKESVLW NLRKIEIQDK FCDIERISPA YLNTNDTAKK  120
IQEEINGLHC KLDEAEGLLR IFEPDTQKLT SLHELDLCEK RLQVALNQVR QRMEQLSTNH  180
TSSYEDNMEQ INALLQYIDN TQAEDTMPSL EKSPYDLWLE LEDYSYTNYI NENNNSHLYA  240
TSETSSLTQS SMNLPSPIIY DAVSQTSVSG VTTYHKEGTF SSLTDENFKQ SQHSTRTFPT  300
LTLQTSFKFA KAETAAASSQ QPLSSNYYKE NNELDCRFQP KVTTPNYQMS QTSTAEGSFS  360
SLTDENFKQL QCSTTIFPPI TPLQTSFSFA TTEMETPTSA LRPAAPYLQA EAAASPNQQL  420
PSSNIEEENY EISWLQPKMK KLKYHHLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755175e-67HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599348.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA0A1S3YQQ30.0A0A1S3YQQ3_TOBAC; agamous-like MADS-box protein AGL104 isoform X2
STRINGXP_009599347.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-46AGAMOUS-like 104