PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009599311.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 105aa    MW: 11887.3 Da    PI: 9.3369
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009599311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16.2e-084888343
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43
                    k+ t+ +  +++L e F++n+yp++++ e+L k+lgLt  q
  XP_009599311.1 48 KKKTYREGAIKRLYESFKENQYPDRDANEKLGKELGLTAHQ 88
                    567888999****************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-54688IPR009057Homeodomain-like
PfamPF000462.2E-54888IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-74888IPR009057Homeodomain-like
CDDcd000863.65E-54888No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MTSPSSTLAD TKYQSGKQKG SRHASDRGLC EKLKIGGMDT SELHSSGKKK TYREGAIKRL  60
YESFKENQYP DRDANEKLGK ELGLTAHQRQ FDQEGYVVLI QVIYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599310.11e-72PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
RefseqXP_009599311.11e-72PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
TrEMBLA0A1S3Z5D41e-70A0A1S3Z5D4_TOBAC; pathogenesis-related homeodomain protein-like isoform X2
STRINGXP_009599310.14e-72(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.14e-06Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain