PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009599185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 449aa MW: 50205.2 Da PI: 4.2881 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 69 | 130 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.....kr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+ +++ + + kr +lg+f ta eAa a+++a+k+++g+ XP_009599185.1 69 CKYRGVRQRT-WGKWVAEIREpVYNSNdyeyhSNgKRLWLGTFSTAIEAAIAYDEAAKAMYGH 130 79*****999.**********77774459986448*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-13 | 69 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.00E-30 | 69 | 138 | No hit | No description |
PROSITE profile | PS51032 | 22.155 | 70 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 70 | 138 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-29 | 70 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-32 | 70 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MSSHNFQRMR RRRNGSASIE ETLSMWKNQK QELNATLDGG IKKKTRKFPA QGSKKGCMRG 60 KGGPENLGCK YRGVRQRTWG KWVAEIREPV YNSNDYEYHS NGKRLWLGTF STAIEAAIAY 120 DEAAKAMYGH NATLNFPDYC VQNSELANYS TSVSIAQTTS SRIEPDLQTS DDGMVAITDE 180 KTILDDPTNL CSDGRADGAQ QDSSVCCLNM ESVVMEMDDS LDDIKGLNCS TGIDSEPILE 240 PTSSCVKVET PSDNDFVQDR RLECVDDPNK VSNSLHILHQ KTTDMKPNDS IFQHDVLRPN 300 ENYESGDQVL FPCDPIALPD YDCSVYALQE QPLDFRSFDN TSADIRSHLE YAEYLLMEDN 360 NTTETTTVSD IFWLNENIGE SYSLQSFLDE SFGVSNLNHS NGVLSKGGES NERCINIPGL 420 EDHGTEVNME DSYIPNSDFD ISSILGDIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 68 | 137 | 3 | 63 | ATERF1 |
3gcc_A | 2e-18 | 68 | 137 | 3 | 63 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599185.1 | 0.0 | PREDICTED: uncharacterized protein LOC104094874 | ||||
TrEMBL | A0A1S4AI72 | 0.0 | A0A1S4AI72_TOBAC; uncharacterized protein LOC107797978 | ||||
STRING | XP_009599185.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7965 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 3e-35 | ERF family protein |