PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23796.3 Da PI: 7.3942 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.8 | 1.9e-11 | 108 | 149 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W ++E+ ll+++ +++G +W+ +a+++g +++ qc++++++ XP_009598897.1 108 WNADEEMLLLEGMEMYGLANWAEVAEHVG-TKSKLQCIDHYNT 149 *****************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00291 | 3.2E-10 | 44 | 88 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 1.4E-10 | 46 | 88 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 9.77E-15 | 48 | 111 | No hit | No description |
CDD | cd02335 | 8.10E-24 | 48 | 96 | No hit | No description |
PROSITE profile | PS50135 | 10.846 | 48 | 91 | IPR000433 | Zinc finger, ZZ-type |
PROSITE pattern | PS01357 | 0 | 50 | 77 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 5.16E-13 | 100 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 21.46 | 103 | 155 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-10 | 104 | 153 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 107 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.93E-12 | 108 | 150 | No hit | No description |
Pfam | PF00249 | 1.2E-11 | 108 | 149 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRSRAVHQS ADDDPSQRSK RKRTVPNVEN FDTAAAGQVL SDGKKALYHC NYCNKDISGR 60 IRIKCAVCSD FDLCVECFSV GAEVQPHKSN HLYRVMDNLS FPLICADWNA DEEMLLLEGM 120 EMYGLANWAE VAEHVGTKSK LQCIDHYNTI YINSPCFPLP DMSHVMGKSR EELLAMAKEQ 180 GKLKSFFCSR WINSRAFLSR IFILLFISLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 6e-37 | 48 | 163 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 6e-37 | 48 | 163 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014608 | 0.0 | BT014608.1 Lycopersicon esculentum clone 134091F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598897.1 | 1e-158 | PREDICTED: transcriptional adapter ADA2-like isoform X1 | ||||
Swissprot | Q75LL6 | 6e-91 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A1S3XXH2 | 1e-133 | A0A1S3XXH2_TOBAC; Transcriptional adapter | ||||
STRING | XP_009598897.1 | 1e-158 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2447 | 12 | 15 |
Publications ? help Back to Top | |||
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