PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598697.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 349aa MW: 39241.1 Da PI: 4.5864 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 43 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++ XP_009598697.1 43 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRS 93 6899******.**********933...5************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-12 | 43 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.72E-26 | 43 | 106 | No hit | No description |
SMART | SM00380 | 9.0E-27 | 44 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-18 | 44 | 99 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.152 | 44 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-26 | 44 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MNIIKSSTSS STNKSTKPRK NAGSSVSSTQ SGKQNAEEQQ NNCRYLGVRR RPWGRYAAEI 60 RDPNTKERHW LGTFDTAEEA ALAYDRAARS MRSNNNKSNK PIRTNFVYSD MPHGSSVTCM 120 ISPDEEYHHQ FQLHQQQQQQ FFNQADQNAA PTVNYTDFSH FSISNMNNNN SNGDGGGEDF 180 ALQQFYNSNY NVHMEDGYRN NSNNTTSIEL PPLPEDITSS GNCYYFSEEV DQDTQFSATT 240 AISSVSNVGY YSSRSSLLNE MLPMDFRAND EQLDSGANII EEAASYEYQF GGGNTVTTTN 300 NTTSVTGSCN NNNNYFGFDD WLQPQQPLQY CSSNIMQNES NNNLGCWFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-19 | 45 | 105 | 6 | 67 | ATERF1 |
3gcc_A | 6e-19 | 45 | 105 | 6 | 67 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598697.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR1-like | ||||
TrEMBL | A0A1S3ZA23 | 0.0 | A0A1S3ZA23_TOBAC; ethylene-responsive transcription factor ESR1-like | ||||
STRING | XP_009598697.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 7e-28 | ERF family protein |