PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22843.7 Da PI: 8.219 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 43 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++ XP_009598696.1 43 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRS 93 6899******.**********933...5************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.45E-25 | 43 | 106 | No hit | No description |
Pfam | PF00847 | 6.5E-13 | 43 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-27 | 44 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-19 | 44 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-26 | 44 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 44 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-9 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-9 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNIIKSSTSS STNKSTKPRK NAGSSVSSTQ SGKQNAEEQQ NNCRYLGVRR RPWGRYAAEI 60 RDPNTKERHW LGTFDTAEEA ALAYDRAARS MRSNNNKSNK PIRTNFVYSD MPHGSSVTCM 120 ISPDEEYHHQ FQLHQQQQQQ FFNQADQNAA PTVNYTDFSH FSISNMNNNN SNGDGGGEDF 180 ALQQFYNSNY NVHMEDGYRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 45 | 105 | 6 | 67 | ATERF1 |
3gcc_A | 2e-19 | 45 | 105 | 6 | 67 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598696.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor ERF087-like | ||||
TrEMBL | A0A1S3ZA23 | 1e-144 | A0A1S3ZA23_TOBAC; ethylene-responsive transcription factor ESR1-like | ||||
STRING | XP_009598696.1 | 1e-150 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-28 | ERF family protein |