PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009598690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 37089.1 Da PI: 4.8785 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++ XP_009598690.1 41 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRS 91 6899******.**********933...5************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.22E-26 | 41 | 104 | No hit | No description |
Pfam | PF00847 | 1.5E-12 | 41 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-18 | 42 | 97 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.0E-27 | 42 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-26 | 42 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 42 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MNIIKSSTSS STNKSTKPRK NIGSNVSSNG KQNAEEQQNN CRYLGVRRRP WGRYAAEIRD 60 PNTKERHWLG TFDTAEEAAL AYDRAARSMR SNNNKSNKPI RTNFVYSDMP HGSSVTCMIS 120 PDEEYHHQFQ LHQQQQQHLL VFSQANQNAA PTVNYADFSH FSISNMNNNN SNGGGGGEDF 180 ALQQFYNSNY NVHMEDGYRY DSNKATSTEL PPLPEDITSS GNCYYFSEES DQTTQFPATT 240 AISSVSDMGY SSNSTSLLNE MMPMSFGTNN EYQYGMTCGE LGGGGSTVTT TSGTISESYN 300 GFGFDDCLQP LQYCSSNIMQ DESNNSNLGY WFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 43 | 103 | 6 | 67 | ATERF1 |
3gcc_A | 3e-19 | 43 | 103 | 6 | 67 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598690.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF087-like | ||||
TrEMBL | A0A1J6J6J1 | 0.0 | A0A1J6J6J1_NICAT; Ethylene-responsive transcription factor lep | ||||
STRING | XP_009598690.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5383 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-28 | ERF family protein |