PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598530.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 504aa    MW: 55923.2 Da    PI: 8.1107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06221525
                    --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                    +C ff+r G+C  G++C+F H
  XP_009598530.1  2 RCEFFSR-GWCIKGNSCRFLH 21
                    5******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.197124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MRCEFFSRGW CIKGNSCRFL HIKDHVTSHD KDVILDEAII KGKLANGKGL EENGKRSVLD  60
GSSDSVPSAV QSGENIKLRS DEELHMRMDG PSSIPEVRRE SLGCKPYLAG YSTSSSPLLK  120
DGSVHKNSLH GGKRSSVLLS DSHQNTVVSS YTSGLDNVKY KRSRSVHDNH GLQVLNDSVD  180
RLSHRCSSSR NIDALDDQKL LDSSQEYSSS KSTSLQQKSS AFPSSEAELS RVDLSRDARR  240
SSDYKTKVSS DNWEPSVPFR PSFFLSQIIG CPESLYDPLR DSIEQSNVGD GPSKFSSSGK  300
GGPVFTKCTQ ENDDPVSPGT LGPEQSSNKH PISGHVYHRD ILPDNLSEKE LSNNEADTAD  360
TAVAHQEHIN TSSKADKLNL STELQRTRLR KKTKSEFERL GHGNEIDIDW KTDRSVNKES  420
RVLKHFHAAL VEFVKELLKP TWSEGLMSKD AYKIIVKKTV DKVVNSLHPH QVPGTAESIR  480
QYLSVSQPKL AKLIEAYVDK YGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625668.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
RefseqXP_018625669.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X2
RefseqXP_018625670.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
RefseqXP_018625671.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X3
TrEMBLA0A1S3Y6560.0A0A1S3Y656_TOBAC; protein FRIGIDA-ESSENTIAL 1-like
STRINGXP_009598530.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-24C3H family protein