PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009598519.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 472aa MW: 53296.8 Da PI: 9.8328

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009598519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	24.6	5.1e-08	370	456	13	99
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrt.lkksdiaaavtrtdifdflvdivprd 99 +++ + ++P ri++i+k ++ ++s ea ++ ka e f le+ r + +r+ + ++++v++ + fdfl + vp++ XP_009598519.1 370 KSESALYQFPHNRIHRIIKDENSDMRMSQEATFVVNKATEKF-LEVFCREAYACSFLDRNNyVGYDHLSSVVSKRHRFDFLSEFVPQK 456 45556789*********99988889**********9.68888877777766666516677799**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.1E-15	357	455	IPR009072	Histone-fold
Pfam	PF00808	1.2E-9	377	440	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.9E-17	378	455	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MPKTKRSNGK SDKNDGDEPE IFVVPSSSTE SQQDEKEEEE ENDGVENVQE EYVRDTDEEE 60 EEEKAAEGKA GNNTNRRGRN EKLEVQKKVY RRKGKKGDEN RENEAKKSKQ SESENLKIYM 120 RKKKVKNGKE KEEEEQNVAK TAKREKDNTE KKMKEKNEKG RIGKNAKSNG DSTRGCKIEN 180 KKKKNEEEGG QKVAKKAKSN GDSSCGGKNE NKKKKREEEG GQKVAKKAKS NGDSSRGSEN 240 EKEESKKKKK RAEEGEGGGG GGGGGGKATK KAKSNGDSSR SKKEEKKMKK TENKKEGNEE 300 AEEKGVKRAQ SNGSTSRATK EKMKREKEEN EGKASNGKVE NGARCNGDTP LKKLKAKKKR 360 EDDEEEEHEK SESALYQFPH NRIHRIIKDE NSDMRMSQEA TFVVNKATEK FLEVFCREAY 420 ACSFLDRNNY VGYDHLSSVV SKRHRFDFLS EFVPQKVRAV DALAEIPKAE ET

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MPKTKRSNGK SDKNDGDEPE IFVVPSSSTE SQQDEKEEEE ENDGVENVQE EYVRDTDEEE  60
EEEKAAEGKA GNNTNRRGRN EKLEVQKKVY RRKGKKGDEN RENEAKKSKQ SESENLKIYM  120
RKKKVKNGKE KEEEEQNVAK TAKREKDNTE KKMKEKNEKG RIGKNAKSNG DSTRGCKIEN  180
KKKKNEEEGG QKVAKKAKSN GDSSCGGKNE NKKKKREEEG GQKVAKKAKS NGDSSRGSEN  240
EKEESKKKKK RAEEGEGGGG GGGGGGKATK KAKSNGDSSR SKKEEKKMKK TENKKEGNEE  300
AEEKGVKRAQ SNGSTSRATK EKMKREKEEN EGKASNGKVE NGARCNGDTP LKKLKAKKKR  360
EDDEEEEHEK SESALYQFPH NRIHRIIKDE NSDMRMSQEA TFVVNKATEK FLEVFCREAY  420
ACSFLDRNNY VGYDHLSSVV SKRHRFDFLS EFVPQKVRAV DALAEIPKAE ET

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009598519.1	0.0	PREDICTED: ribosome-binding protein 1 isoform X1
TrEMBL	A0A1S4B6J2	0.0	A0A1S4B6J2_TOBAC; ABC transporter F family member 4-like
STRING	XP_009598519.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9304	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-24	nuclear factor Y, subunit C10