PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598348.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 356aa    MW: 40582.1 Da    PI: 6.1993
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092833172155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  XP_009598348.1 283 KWPYPSESEKVALAETTGLDQKQINNWFINQRKRH 317
                     669*****************************885 PP

2ELK37.93.6e-13237258122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++LlrKYsgyL+sLkqE+s
  XP_009598348.1 237 ELKNHLLRKYSGYLSSLKQELS 258
                     9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.0E-20103147IPR005540KNOX1
PfamPF037901.7E-22104146IPR005540KNOX1
SMARTSM012563.1E-23154205IPR005541KNOX2
PfamPF037914.4E-23158203IPR005541KNOX2
SMARTSM011883.5E-7237258IPR005539ELK domain
PfamPF037892.5E-10237258IPR005539ELK domain
PROSITE profilePS5121311.296237257IPR005539ELK domain
PROSITE profilePS5007112.924257320IPR001356Homeobox domain
SuperFamilySSF466891.63E-19258332IPR009057Homeodomain-like
SMARTSM003895.4E-13259324IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-27262323IPR009057Homeodomain-like
CDDcd000861.13E-11269321No hitNo description
PfamPF059208.3E-17277316IPR008422Homeobox KN domain
PROSITE patternPS000270295318IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MENNYNQLGE NSSQRGNNFL YGGIPLLSSP NSSIYGRTSG GGGGGDCYDQ SQAVVHPIVK  60
TEGGSSTSHH HHTFQYPSII RSGYHHQTVQ NHHESESSGS EVDALKAKII AHPQCSNLLD  120
AYMDCQKVGA PPEVVARLSA VRQEFEVRQR DSSTDRDVSK DPELDQFMEA YYDMLVKYRE  180
ELTRPLHEAM DFMRKIETQL NMLEDKCEGV GSSEEEQDNS GGETEIPEID PRAEDRELKN  240
HLLRKYSGYL SSLKQELSKK KKKGKLPKDA RQKLLSWWEL HYKWPYPSES EKVALAETTG  300
LDQKQINNWF INQRKRHWKP SEDMQFMVMD GLHPQNAAAL YMEGHYMGEG PFRLGQ
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0257140.0AB025714.1 Nicotiana tabacum mRNA for homeobox 20, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441623.10.0PREDICTED: homeotic protein knotted-1-like isoform X2
SwissprotQ413300.0KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A1S3XNY00.0A0A1S3XNY0_TOBAC; homeotic protein knotted-1-like isoform X2
STRINGXP_009598343.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-132KNOTTED-like from Arabidopsis thaliana