PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 356aa MW: 40582.1 Da PI: 6.1993 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.4e-09 | 283 | 317 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+ +gL+++q+ +WF N+R ++ XP_009598348.1 283 KWPYPSESEKVALAETTGLDQKQINNWFINQRKRH 317 669*****************************885 PP | |||||||
2 | ELK | 37.9 | 3.6e-13 | 237 | 258 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s XP_009598348.1 237 ELKNHLLRKYSGYLSSLKQELS 258 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.0E-20 | 103 | 147 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.7E-22 | 104 | 146 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.1E-23 | 154 | 205 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.4E-23 | 158 | 203 | IPR005541 | KNOX2 |
SMART | SM01188 | 3.5E-7 | 237 | 258 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.5E-10 | 237 | 258 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 237 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.924 | 257 | 320 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-19 | 258 | 332 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.4E-13 | 259 | 324 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 262 | 323 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.13E-11 | 269 | 321 | No hit | No description |
Pfam | PF05920 | 8.3E-17 | 277 | 316 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 295 | 318 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MENNYNQLGE NSSQRGNNFL YGGIPLLSSP NSSIYGRTSG GGGGGDCYDQ SQAVVHPIVK 60 TEGGSSTSHH HHTFQYPSII RSGYHHQTVQ NHHESESSGS EVDALKAKII AHPQCSNLLD 120 AYMDCQKVGA PPEVVARLSA VRQEFEVRQR DSSTDRDVSK DPELDQFMEA YYDMLVKYRE 180 ELTRPLHEAM DFMRKIETQL NMLEDKCEGV GSSEEEQDNS GGETEIPEID PRAEDRELKN 240 HLLRKYSGYL SSLKQELSKK KKKGKLPKDA RQKLLSWWEL HYKWPYPSES EKVALAETTG 300 LDQKQINNWF INQRKRHWKP SEDMQFMVMD GLHPQNAAAL YMEGHYMGEG PFRLGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025714 | 0.0 | AB025714.1 Nicotiana tabacum mRNA for homeobox 20, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016441623.1 | 0.0 | PREDICTED: homeotic protein knotted-1-like isoform X2 | ||||
Swissprot | Q41330 | 0.0 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | A0A1S3XNY0 | 0.0 | A0A1S3XNY0_TOBAC; homeotic protein knotted-1-like isoform X2 | ||||
STRING | XP_009598343.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-132 | KNOTTED-like from Arabidopsis thaliana |