PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598140.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 213aa    MW: 24449.1 Da    PI: 6.1458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1885136155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGVr+++ +g+++AeIrdp     k +r +lg++ t+e+Aa a+++ + kl+g
  XP_009598140.1  85 KKYKGVRRRP-WGKYAAEIRDP---ErKGARLWLGTYETPEDAALAYDRTAFKLRG 136
                     59********.**********7...3235*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-3385146No hitNo description
Gene3DG3DSA:3.30.730.108.9E-3186145IPR001471AP2/ERF domain
PfamPF008473.8E-1386136IPR001471AP2/ERF domain
PROSITE profilePS5103224.09286144IPR001471AP2/ERF domain
SMARTSM003801.0E-3686150IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2386145IPR016177DNA-binding domain
PRINTSPR003671.6E-98798IPR001471AP2/ERF domain
PRINTSPR003671.6E-9110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MQGIPLEFDQ QNFLDTMQHL FNDPDFSQIF SELNSSNNTI QTPRQSSCEN TIFAQHNQEN  60
LYADQDHIET AENKEPNSEV PLEKKKYKGV RRRPWGKYAA EIRDPERKGA RLWLGTYETP  120
EDAALAYDRT AFKLRGSRAV LNFPHLIESN VTEINRVRPR RRSRELDIEL SSSSLGDAPS  180
SKRRNVELIN SLATANLDSQ SIVERCLTSS FFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2985144160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2985149468ATERF1
3gcc_A3e-2985149468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598140.11e-158PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_016449158.11e-158PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A1S3YAW81e-157A0A1S3YAW8_TOBAC; ethylene-responsive transcription factor 2-like
STRINGXP_009598140.11e-157(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ethylene-responsive element binding factor 13