PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009597907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36827.9 Da PI: 9.9667 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.6 | 1.4e-18 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ XP_009597907.1 17 RGHWRPAEDERLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 61.2 | 2.1e-19 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+lv a++ +G++ W++I+r ++ gRt++ +k++w+ + XP_009597907.1 69 RRPFTEEEEERLVAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 113 679*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.092 | 12 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-29 | 15 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-15 | 16 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 17 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-27 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.36E-13 | 20 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.399 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-16 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-12 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 71 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MAEGGGSGDD TRSSCPRGHW RPAEDERLRQ LVEQYGPQNW NSIAEKLQGR SGKSCRLRWF 60 NQLDPRINRR PFTEEEEERL VAAHRIHGNK WALISRLFPG RTDNAVKNHW HVLMARKQRE 120 QSKNICGKRS YKLQHDNFLS DSKSPSYGFR RRNNDNNNNN PKTQLEGNYG SKISFFEFQN 180 PNKDRVFSLS TYSPELFGRN GSHLFRESSN FSDKKPLCQN NLSFSLCGGY EGTAALGVPN 240 NYKRSNIQNP FSYSVPADHR INVSDGMTEG VVNIRDSTFS LKKMLRANIE QQRRQQQYGE 300 EAREKEDIPF IDFLGVGISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-31 | 17 | 117 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-31 | 17 | 117 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597907.1 | 0.0 | PREDICTED: myb-related protein B-like | ||||
Refseq | XP_016438115.1 | 0.0 | PREDICTED: myb-related protein B-like | ||||
TrEMBL | A0A1S3XE42 | 0.0 | A0A1S3XE42_TOBAC; myb-related protein B-like | ||||
STRING | XP_009597907.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 2e-66 | myb domain protein 52 |