PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009597482.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 264aa MW: 29474.7 Da PI: 7.1436

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009597482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.2e-18	57	105	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdp+ + +r++lg+f tae Aa a+++a+++++g XP_009597482.1 57 YRGVRQRP-WGKYAAEIRDPK----KaARVWLGTFETAEAAAIAYDEAALRFKG 105 9*****.******94....45**********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.749	56	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.71E-21	56	114	IPR016177	DNA-binding domain
SMART	SM00380	4.4E-36	56	119	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-31	56	114	IPR001471	AP2/ERF domain
CDD	cd00018	5.57E-20	57	114	No hit	No description
PRINTS	PR00367	9.9E-11	57	68	IPR001471	AP2/ERF domain
Pfam	PF00847	7.1E-12	57	105	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.9E-11	79	95	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MYSAARSQQD MSTMVAVLSQ VIGNTSTPPL TTLSHRSLQN QPQPNPQQGN IERRRLYRGV 60 RQRPWGKYAA EIRDPKKAAR VWLGTFETAE AAAIAYDEAA LRFKGNKAKL NFPERVLAKT 120 EFGYLTTTPQ EQLIPAANFL PTCNFKPFSQ LQHYPINVDH YAQLLRSGNN NADSSRFYHT 180 SGFDGEALNT AETANSWLDP PLSSTFISES LSMTSLVQQA SHVQQEPSNY QQVDENILRF 240 SSHFGNSSSS GPIESCNNLE DDPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-26	57	116	3	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269\|PubMed:23616605}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269\|PubMed:23616605}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597481.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF113-like
Refseq	XP_009597482.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF113-like
Refseq	XP_016478342.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF113-like
Swissprot	Q9FH54	3e-45	EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBL	A0A1S4ANM5	0.0	A0A1S4ANM5_TOBAC; ethylene-responsive transcription factor ERF113-like
STRING	XP_009597481.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	1e-32	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]