PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597158.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 257aa    MW: 28864.2 Da    PI: 5.7623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.82.1e-2195144255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++a+k+++g
  XP_009597158.1  95 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDEAAKRIRG 144
                     8********.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-4095158IPR001471AP2/ERF domain
PROSITE profilePS5103224.42195152IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2395152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-3395153IPR001471AP2/ERF domain
PfamPF008475.9E-1595144IPR001471AP2/ERF domain
CDDcd000181.23E-3595153No hitNo description
PRINTSPR003676.0E-1296107IPR001471AP2/ERF domain
PRINTSPR003676.0E-12118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCGGAIIPDY EPVGNRCRKI TASDLWAELD PISDFWSSSS SSSSIAGKSD SVQSLTHSYN  60
KPQKSDSGKL NQLEKGTISV KVEKESSGPR ARKNKYRGIR QRPWGKWAAE IRDPQKGVRV  120
WLGTFNTAEE AARAYDEAAK RIRGDKAKLN FPEPPSPPAK RHCTSTIPDQ PTRSDLMSQK  180
PASIMLNYGY ENQTPYYPME MPAAEDPQHH DYELKEQISN LESFLDLEPD SGIVDSDPLN  240
IFLMDDFAAT QQQQLFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2391152163ATERF1
3gcc_A1e-2391152163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1546560.0AF154656.1 Nicotiana tabacum clone PR47 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597158.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3
RefseqXP_016447100.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A1S3Y4K70.0A0A1S3Y4K7_TOBAC; ethylene-responsive transcription factor RAP2-3-like
STRINGXP_009597158.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-44ethylene-responsive element binding protein