PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009597146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 128aa MW: 14200.8 Da PI: 8.4322 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41 | 3.1e-13 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ XP_009597146.1 7 CSGCRTILLYPRGATNVCCAVCNA 30 **********************98 PP | |||||||
2 | zf-LSD1 | 48.1 | 1.9e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRCa+C+tV XP_009597146.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.0E-13 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.0E-11 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-17 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAT 60 SVRCACCHTV NLVPGTFFFR IKESHSLLLK FSFSSWKPSS YFSLSIFSYL AFENIYCILT 120 SICFTFFQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013298 | 7e-82 | BT013298.1 Lycopersicon esculentum clone 134929F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597146.1 | 2e-89 | PREDICTED: protein LOL1-like | ||||
Swissprot | Q93ZB1 | 7e-36 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A1S4D229 | 3e-47 | A0A1S4D229_TOBAC; protein LOL2-like | ||||
TrEMBL | A0A1S4DBD8 | 3e-47 | A0A1S4DBD8_TOBAC; protein LOL2-like | ||||
TrEMBL | A0A1U7WYC9 | 3e-47 | A0A1U7WYC9_NICSY; protein LOL2-like isoform X1 | ||||
STRING | XP_009597146.1 | 7e-89 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-37 | lsd one like 1 |
Publications ? help Back to Top | |||
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