PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009596675.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 179aa MW: 20545.3 Da PI: 8.8245 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++l+d+++q+G g+W+ ++ g+ R++k+c++rw +yl XP_009596675.1 14 RGAWSKQEDQKLIDYITQHGEGCWRNLPKAAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_009596675.1 67 RGNFSEDEDDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.965 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.882 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-12 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MRKTCCDNKE EMHRGAWSKQ EDQKLIDYIT QHGEGCWRNL PKAAGLLRCG KSCRLRWMNY 60 LSPNIKRGNF SEDEDDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HLRRKLIKMG 120 IDPNNHLISH YLHRKSLEFW PENSKTDGSL LSDAGSSCAN DQQPIGSLPD LNSLPSIHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-30 | 11 | 116 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF985023 | 1e-158 | KF985023.1 Petunia x hybrida cultivar Mitchell R2R3-MYB anthocyanin repressor (MYB27) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009596675.1 | 1e-131 | PREDICTED: transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 3e-67 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A1S4CNG3 | 1e-129 | A0A1S4CNG3_TOBAC; transcription factor MYB3-like | ||||
STRING | XP_009596675.1 | 1e-130 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-69 | myb domain protein 3 |