PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009596112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31747.4 Da PI: 5.5876 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.2 | 1.6e-12 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed +l++ + G +W+ +++ g+ R++k+c++rw +yl XP_009596112.1 14 RGPWTIDEDHKLLNFILNNGIQCWRMVPKFAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.1e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + ++ E+ +++++++ +G++ W++Ia++++ gRt++++k++w++ XP_009596112.1 68 EPLSEAEENQIIQLHACFGNR-WSKIASHFP-GRTDNEIKNHWNT 110 677999***************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.919 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-6 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-10 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.97E-5 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.759 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-10 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGRQPCCDKV GIKRGPWTID EDHKLLNFIL NNGIQCWRMV PKFAGLLRCG KSCRLRWINY 60 LRPDLKREPL SEAEENQIIQ LHACFGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG 120 IDPLTHNPIE ALNLENLEQK PDETITQSNM PTHDHETENS STSSDTKKTE TDIKIDDITN 180 DFSIVENDYS NFCGNLDVDL LSNTTKTMSY SLETAESINF SSASTATEYS SSVVPAEGQH 240 SIQQWFYSVD SLFSWDNNVN QLGVGEDFIF WRNYNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009596112.1 | 0.0 | PREDICTED: myb-related protein 315-like | ||||
TrEMBL | A0A1S4CFB6 | 0.0 | A0A1S4CFB6_TOBAC; myb-related protein 315-like | ||||
STRING | XP_009596112.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 3e-76 | myb domain protein 40 |