PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009596026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 192aa    MW: 21385.3 Da    PI: 8.4802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009596026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-161763252
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++  +++
  XP_009596026.1 17 VYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVGALA 63
                    59****998.**********843...6******************987776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-101759IPR001471AP2/ERF domain
SMARTSM003805.9E-301780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-291775IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-201775IPR016177DNA-binding domain
PROSITE profilePS5103221.5091774IPR001471AP2/ERF domain
CDDcd000187.88E-281874No hitNo description
PRINTSPR003671.1E-91829IPR001471AP2/ERF domain
PRINTSPR003671.1E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEAKKIKRIR ESSKHQVYRG VRMRNWGKWV SEIREPRKKS RIWLGTFPNP EMAARAHDVG  60
ALAIKDNGAT LNFPQLASSL PKPISLTPRD IQTAAAKTAS MQNFDSSRSL SSSLSTSSSL  120
LAIDSAMAVL GRTSEELTQI IELPRLGTSF DDTFDLKNDF VCADYPSPIW LSCEDELGAI  180
SSCFEPSLLW NY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-151275973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018624993.11e-124PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD39e-64DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J6KI131e-95A0A1J6KI13_NICAT; Dehydration-responsive element-binding protein 3
STRINGXP_009596026.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]