PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009596026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21385.3 Da PI: 8.4802 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 4e-16 | 17 | 63 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ +++ XP_009596026.1 17 VYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVGALA 63 59****998.**********843...6******************987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.5E-10 | 17 | 59 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-30 | 17 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-29 | 17 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 17 | 75 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.509 | 17 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.88E-28 | 18 | 74 | No hit | No description |
PRINTS | PR00367 | 1.1E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEAKKIKRIR ESSKHQVYRG VRMRNWGKWV SEIREPRKKS RIWLGTFPNP EMAARAHDVG 60 ALAIKDNGAT LNFPQLASSL PKPISLTPRD IQTAAAKTAS MQNFDSSRSL SSSLSTSSSL 120 LAIDSAMAVL GRTSEELTQI IELPRLGTSF DDTFDLKNDF VCADYPSPIW LSCEDELGAI 180 SSCFEPSLLW NY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 12 | 75 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018624993.1 | 1e-124 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 9e-64 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1J6KI13 | 1e-95 | A0A1J6KI13_NICAT; Dehydration-responsive element-binding protein 3 | ||||
STRING | XP_009596026.1 | 1e-140 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-64 | ERF family protein |
Publications ? help Back to Top | |||
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