PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 705aa MW: 78019.4 Da PI: 7.7434 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.3 | 1.3e-20 | 613 | 693 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e ++Li++r e+++r++ + +++lWee+s+++ ++g++rsp qCk+ w +l ++y++ k +k+ ++++pyf++++ XP_009595703.1 613 RWKHDEMKKLIKLRGELHSRFQVVRGRMALWEEISSNLLSTGVNRSPAQCKSLWASLVQKYEESKSDKKS-----QEKWPYFEEMN 693 8****************************************************************99998.....578*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.1E-35 | 9 | 180 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 3.1E-44 | 15 | 345 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 4.3E-7 | 288 | 317 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 8.293 | 606 | 670 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 607 | 672 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.5E-18 | 611 | 695 | No hit | No description |
CDD | cd12203 | 1.97E-21 | 612 | 677 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MDMKTTLVIP ALDSHTPIFA SSFTMELIKK RLKEFGIFVP SRLKVFKTRR KFTAGPFEVE 60 PITVTHSIPD CSGIVLRCSD GTILHTGDWK IDESPLDGKV FDREGLEELS KEGVTLMMSD 120 STNVLSPGRT LSETVVADSL LRHISAAKGR IITTQFASNI HRLGSVKAAA DLTGRKLVFV 180 GMSLRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS 240 SHSLKLNKED IVLYSAKVIP GNETRVMDML NRISDIGSTI VMGKNELLHT SGHAHREELE 300 EVLKIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTAVIK NGEMLGVSHL RNRKVLSNGF 360 ISLGKENLQL MYSDGDKAFG TAAELCIDER QKIASDGIIV VSMEILRPQS TNGATEKALK 420 GKIRITTRCL WLDKGKLLDA LHKAAHAALS SCPLSCPLPH MERTVSEVLR KMVRKYSSKR 480 PEVIAIAFEN PAGVLADEIN GKLAGKSHVG FGISALRNVM DEDQKGKRAS EAHAEEGHGP 540 GYPIDDAAEQ VEGDDMDIER LTHDRATTSS SISGDGYFTT KEESESSREE SIQIDSGFPE 600 SMMKSSKPLK RNRWKHDEMK KLIKLRGELH SRFQVVRGRM ALWEEISSNL LSTGVNRSPA 660 QCKSLWASLV QKYEESKSDK KSQEKWPYFE EMNEILSDLE ATAQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 2e-62 | 17 | 489 | 104 | 560 | RIBONUCLEASE J |
5a0t_B | 2e-62 | 17 | 489 | 104 | 560 | RIBONUCLEASE J |
5a0v_A | 2e-62 | 17 | 489 | 104 | 560 | RIBONUCLEASE J |
5a0v_B | 2e-62 | 17 | 489 | 104 | 560 | RIBONUCLEASE J |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-150 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 1e-150 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595703.1 | 0.0 | PREDICTED: uncharacterized protein LOC104091946 isoform X2 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A1S3XRK1 | 0.0 | A0A1S3XRK1_TOBAC; ribonuclease J-like | ||||
STRING | XP_009595689.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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