PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595604.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 491aa    MW: 53067.9 Da    PI: 6.9867
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR25.92.1e-0830551642
             TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                    +YCeCfa+g +C+  C+C +C+N+ e+
  XP_009595604.1 30 RYCECFASGIYCDG-CNCANCHNNVEN 55
                    7*************.********9875 PP
2TCR51.22.4e-16100139140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_009595604.1 100 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 139
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.10620140IPR005172CRC domain
SMARTSM011140.00212955IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.0E-63052IPR005172CRC domain
SMARTSM011148.4E-20100141IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.0E-13103138IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MFEVHQLSLA CGGSIFAVSI ATMTSLSETR YCECFASGIY CDGCNCANCH NNVENEPARR  60
EAVEATLERN PHAFRPKIAS SPHGVRENRE EAGDGLVLPK HNKGCHCKKS GCLKKYCECF  120
QANILCSENC KCMDCKNFEG SQERQALFHG DHANNMAYLQ QAANAAITGA IGSSGYGSPP  180
VNKKRKAQEL FFGSMIKDPV HRLGQLQQES QIKASVPPSP LSSIPGPRVG NAAALGPSKF  240
TYRSLLADLI HPHDIKELCS VLVDYAWEAG RMLADERDAS LKQAKCHSEA SYPSSGIEKV  300
IPDDCSNAVR AENMDESSFD SANVPKERPM SPGTLALMCD EQNTIFTAAA APPNDPTSLS  360
NNTSSQLPHG QGMKEVYPEL EKIVLTRTRD CLKKLITLGE LKETKCSSMV RGADSGSQNE  420
VNGNGIAMTD SRNQHEPFRN GVANTVPTPP PPPPPPQKVE PGTTAFNNNP CPKVHPPDGN  480
GDVKSKICNK L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-262514919132Protein lin-54 homolog
5fd3_B6e-262514919132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595604.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3
SwissprotQ9SZD11e-148TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7VE330.0A0A1U7VE33_NICSY; protein tesmin/TSO1-like CXC 5 isoform X3
STRINGXP_009766310.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-151Tesmin/TSO1-like CXC domain-containing protein