PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CPP | ||||||||
Protein Properties | Length: 601aa MW: 65936.2 Da PI: 8.7938 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.9 | 3.1e-16 | 269 | 308 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_009595599.1 269 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 308 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 18.871 | 142 | 309 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 269 | 310 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 272 | 307 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MEESEGGDFP PKKAQSEPAA TEASAHVVTD YPAKKLARQL DFTGFGGAAA VALPEQAKQT 60 QQQVMKSGQL SVSMKSTQMT RPQLQTQTQA LPQSQQHHIL LMPMQQTRVL PPHPSIRPVK 120 PESPKARSRQ SANEAKDGTP KKPKQCNCKH SRCLKLAIVR DLSQRINSSD SGKRNQSPEV 180 FFWRLFQGCL RLLYLCQCCA KSNTTTRVVT VRRPNPSENL RQQPPHAPPR ATRSSRADAY 240 DHFRPFFEKF PSEQLGCLEE AGDGLVLPKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK 300 CMDCKNFEGS QERQALFHGD HANNMAYLQQ AANAAITGAI GSSGYGSPPV NKKRKAQELF 360 FGSMIKDPVH RLGQLQQESQ IKASVPPSPL SSIPGPRVGN AAALGPSKFT YRSLLADLIH 420 PHDIKELCSV LVDYAWEAGR MLADERDASL KQAKCHSEAS YPSSGIEKVI PDDCSNAVRA 480 ENMDESSFDS ANVPKERPMS PGTLALMCDE QNTIFTAAAA PPNDPTSLSN NTSSQLPHGQ 540 GMKEVYPELE KIVLTRTRDC LKKLITLGEL KELGPPTRMG TSGICSCVSI GNKMFFNGAR 600 C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-15 | 269 | 318 | 83 | 132 | Protein lin-54 homolog |
5fd3_B | 7e-15 | 269 | 318 | 83 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018624834.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | A0A1U7VMX5 | 0.0 | A0A1U7VMX5_NICSY; protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | A0A1U7VWI3 | 0.0 | A0A1U7VWI3_NICSY; protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
STRING | XP_009595583.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-122 | Tesmin/TSO1-like CXC domain-containing protein |