PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595592.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 617aa    MW: 66983.8 Da    PI: 8.1442
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14142181242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     + k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  XP_009595592.1 142 KPKQCNCKHSRCLKLYCECFASGIYCDG-CNCANCHNNVEN 181
                     5699************************.********9875 PP
2TCR50.83.2e-16226265140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_009595592.1 226 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 265
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-15141181IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.463142266IPR005172CRC domain
PfamPF036381.3E-11144178IPR005172CRC domain
SMARTSM011148.4E-20226267IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12229264IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MEESEGGDFP PKKAQSEPAA TEASAHVVTD YPAKKLARQL DFTGFGGAAA VALPEQAKQT  60
QQQVMKSGQL SVSMKSTQMT RPQLQTQTQA LPQSQQHHIL LMPMQQTRVL PPHPSIRPVK  120
PESPKARSRQ SANEAKDGTP KKPKQCNCKH SRCLKLYCEC FASGIYCDGC NCANCHNNVE  180
NEPARREAVE ATLERNPHAF RPKIASSPHG VRENREEAGD GLVLPKHNKG CHCKKSGCLK  240
KYCECFQANI LCSENCKCMD CKNFEGSQER QALFHGDHAN NMAYLQQAAN AAITGAIGSS  300
GYGSPPVNKK RKAQELFFGS MIKDPVHRLG QLQQESQIKA SVPPSPLSSI PGPRVGNAAA  360
LGPSKFTYRS LLADLIHPHD IKELCSVLVD YAWEAGRMLA DERDASLKQA KCHSEASYPS  420
SGIEKVIPDD CSNAVRAENM DESSFDSANV PKERPMSPGT LALMCDEQNT IFTAAAAPPN  480
DPTSLSNNTS SQLPHGQGMK EVYPELEKIV LTRTRDCLKK LITLGELKET KCSSMVRGAD  540
SGSQNEVNGN GIAMTDSRNQ HEPFRNGVAN TVPTPPPPPP PPQKVEPGTT AFNNNPCPKV  600
HPPDGNGDVK SKICNKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3114027510132Protein lin-54 homolog
5fd3_B2e-3114027510132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595592.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-178TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7VWI30.0A0A1U7VWI3_NICSY; protein tesmin/TSO1-like CXC 5 isoform X1
STRINGXP_009766310.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-178Tesmin/TSO1-like CXC domain-containing protein