PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27378 Da PI: 9.5149 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.8 | 1.4e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsstg+lyeyss XP_009595408.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 86.8 | 4.2e-29 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ +q+e+a L+++++nLq+++R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ +R +K+e+l+++i+el +k + +++en++L kk+ XP_009595408.1 81 TPTSEVRFWQREAAMLRQQLQNLQENHRQMMGEQLSGLSVKDLQNLENQLEMSLRGVRVRKDEILIDEIQELNRKGNLIHQENMELYKKV 170 5678899********************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.819 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.09E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 6.28E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.6E-28 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.004 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYEYSST 60 SMKSVIERYN KTKEENHQLA TPTSEVRFWQ REAAMLRQQL QNLQENHRQM MGEQLSGLSV 120 KDLQNLENQL EMSLRGVRVR KDEILIDEIQ ELNRKGNLIH QENMELYKKV NLIRQENMEL 180 YKKVYGNRDA NGVSGNSLAP NSLSINEDPH APVHLQLSQP QQQNYDTSGT TELGLQLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 8e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 8e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 8e-21 | 1 | 74 | 1 | 74 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 4e-51 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 4e-51 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595408.1 | 1e-175 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_016507614.1 | 1e-175 | PREDICTED: MADS-box transcription factor 23-like isoform X4 | ||||
Swissprot | Q6EP49 | 1e-117 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1S4D2W9 | 1e-174 | A0A1S4D2W9_TOBAC; MADS-box transcription factor 23-like isoform X4 | ||||
STRING | XP_009595408.1 | 1e-175 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-111 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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