PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595391.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 48168.5 Da PI: 7.8509 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.8e-09 | 130 | 150 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C FaHg XP_009595391.1 130 VCSEFRK-GNCSRGDNCEFAHG 150 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.59E-5 | 124 | 154 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 125 | 151 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.45 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 129 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-7 | 130 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4 | 160 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.287 | 160 | 184 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MEGLCAEQHH HKFHPSHQLY LNKKSLRDID IPPRKLLSRR SNLSVDPVSD MFMDSPKSDS 60 DTLFQKFLPY NSLDEDDSDP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD 120 PRRFHYSGTV CSEFRKGNCS RGDNCEFAHG VFECWLHPTR YRTEACKDGK NCKRKVCFFA 180 HTPRQLRVLP PSCHESSGSG SSPRNSPVHE KKYRNLNHCC MFCHSVSASP TSTLMGMSHM 240 SPPMSPSLSP PLSPAKTQFS SPMMSRYSDR FGSVESSFGM GQLDHAGLMS YKDALTELVT 300 SLEAMNVNAN HEANSSSSSA AAAVNNFDGK LPWLDVSFNN NNNYDDQQQF LLSPYSTPSP 360 SPVSSSRTKF YTRDFPSPSP VSSSGLSFSP LSSSNISFVE DTNNATNRYY NENGLGGPDF 420 GWVNDLLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595391.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 61-like | ||||
TrEMBL | A0A1S3YP14 | 0.0 | A0A1S3YP14_TOBAC; zinc finger CCCH domain-containing protein 2-like | ||||
STRING | XP_009595391.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10595 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 2e-76 | C3H family protein |