PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24229.9 Da PI: 8.4539 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 7e-21 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++ a+++++g XP_009595390.1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDTAAREFRG 75 6********.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-22 | 26 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.157 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-40 | 26 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-31 | 26 | 83 | No hit | No description |
Pfam | PF00847 | 5.7E-14 | 26 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-33 | 26 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAVKNKVSNG NLKGGNVKTD GVKEVHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE 60 EAAKAYDTAA REFRGPKAKT NFPSPTENQS PSHSSTVESS SGETGVHAPP HAPLELDLTR 120 HLGSVAADGG DNCRRSGEVG YPIFHQQPTV AVLPNGQPVL LFDSLWRAGV VNRPQPYHVT 180 PMGFNGVNAG VGPTVSDSSS AVEENQYDGK RGIDLDLNLA PPMEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 26 | 83 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 26 | 83 | 5 | 63 | ATERF1 |
3gcc_A | 2e-21 | 26 | 83 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | TOBBY4B | 0.0 | D38124.1 Nicotiana tabacum EREBP-3 mRNA for ethylene-responsive element binding protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595390.1 | 1e-167 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Refseq | XP_009609806.1 | 1e-167 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q40477 | 1e-166 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1S3YN67 | 1e-163 | A0A1S3YN67_TOBAC; ethylene-responsive transcription factor 4 | ||||
STRING | XP_009595390.1 | 1e-166 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009609806.1 | 1e-166 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 5e-28 | erf domain protein 9 |
Publications ? help Back to Top | |||
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