PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009595347.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 446aa MW: 49916.1 Da PI: 8.6189 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.1 | 4.9e-16 | 222 | 268 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq XP_009595347.1 222 VHNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 268 6*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.739 | 218 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-18 | 221 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 222 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-13 | 222 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-15 | 223 | 272 | No hit | No description |
SMART | SM00353 | 1.0E-16 | 224 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 446 aa Download sequence Send to blast |
MSHNWNHRQQ RQEQVVEEQE ENRYPHVHNQ QPQNHLVPMS KCEVAELTWE NGQLAMLRLG 60 NNLPNEQTKH TWERASDTLE SVVHQATNCQ KQNLDLKGIS DKNKANINTE NIVKQETIGG 120 VAKKRMRSDS DPQLYGTSGR LVGEFHKNIV DQHAEPSASA SARDTVMTWP NYHSLDESSR 180 SFKSKATFNE DSACHIAGLE NKETERETKA HNTLGRSRTA AVHNQSERRR RDRINEKMKA 240 LQKLVPNASK TDKASMLDEV IKYLKQLQAQ IQLISNARNM ESQMMMPPLS LGLMQLPHIQ 300 MPLLARMGMG VNLGMTTGML NNMTANLAPA AATTPHQSLT APFIYPTSVA TSCPPFMSPA 360 FAMATTIPTP PQANGDANAS RAAFGAPSDT HSFPFNDPRS AFLAQSMNME FNNEMAAQYM 420 QQANNLSMQT RSKNLNQGNL NQRQTE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 226 | 231 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595347.1 | 0.0 | PREDICTED: transcription factor PIF7-like | ||||
TrEMBL | A0A1U7YFB6 | 0.0 | A0A1U7YFB6_NICSY; transcription factor PIF7 | ||||
STRING | XP_009595347.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5437 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00050.1 | 4e-38 | bHLH family protein |